Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1029
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 35 0.010
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 29 0.69
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 28 0.91
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 28 1.2
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.1
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 27 2.1
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 27 2.8
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 26 3.7
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 3.7
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 4.8
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 26 4.8
SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4 |Schiz... 26 4.8
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 26 4.8
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos... 25 6.4
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 25 6.4
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar... 25 6.4
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 25 8.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 8.5
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 34.7 bits (76), Expect = 0.010
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 149 PSRFLPYKSDARMRTPLPPPETISMPT 229
PS F+ K +R+ TPLPPP + S+PT
Sbjct: 167 PSSFITAKQLSRLPTPLPPPSSSSLPT 193
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 28.7 bits (61), Expect = 0.69
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -3
Query: 578 SPHSAYSIGFR-YLCYPECIYY--HQLCIFFVFHCASIIFFVPCFY 450
+P +A S + Y+ +P C++ H L + F C+ +F+ FY
Sbjct: 151 TPFNARSANLKNYIAFPICLFVINHILILLGYFQCSYSVFYASVFY 196
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 28.3 bits (60), Expect = 0.91
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 192 RRYLRRKQSQCRRGRSIEQPGVHENFQAIRSLRNEMEKKNQIGNE 326
R Y+++ QSQ + +S+ E + +R+LRN Q+G +
Sbjct: 594 RSYIQQLQSQIK-SQSVHHENAAEEIRKMRNLRNSRINSQQVGEK 637
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 226 DEGAASNNQEYMKISKQFAHLEMKWKKRIKSETKKTLTCLHLQIEKSYIMV 378
D+ + Q I AHLE + KKRI+ ++ L L E +Y+ +
Sbjct: 735 DKQNKAKTQRCKDIINFHAHLEKEEKKRIERSARQRLQALRADDEAAYLQL 785
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 276 IRSLRNEMEKKNQIGNEENVDLPSSTDRKVIYNGGIFPLNEK 401
+ SLR E E+ Q+ + +L S D K++ N I LN++
Sbjct: 661 VDSLRKENEENKQVIALKESELVKSNDNKLLLNEQIESLNDQ 702
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 238 ASNNQEYMKISKQFAHL--EMKWKKRIKSETKKTLTCLHL 351
AS N + ++ K A + E++W R + ET T+ LH+
Sbjct: 421 ASINNIHTELQKWIADIPMELQWNTRSQKETSSTVLLLHM 460
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +2
Query: 416 RPSDAFSLEWLCRNTAQR--KLWKHSEIRRK 502
R S FSL W CR+ R KL K EI K
Sbjct: 389 RHSKLFSLPWPCRHKVNRELKLEKEKEINTK 419
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -3
Query: 263 FMYSWLFDAAPSSALRLFPAEVAASA--SARRICKVKIATGASDNAISPISGGNS 105
F Y+WL D R +VA++ S ++I ++ A G D I+G +S
Sbjct: 224 FSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASS 278
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 499 SSYFTVLP*FSLCRVSTQPFQTKGITWAVFVLSFSF 392
SS F LP SLC + F K + +F +F+F
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTLFAQTFAF 728
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 57 TRNITYKSSQHANGDNRVTTRDWRNRIIRCSRRDFYL 167
TR + S+ N + +DWRN ++ + RDF L
Sbjct: 717 TRTKVFTSNPIYNAGSEKFVKDWRNAMLCFTVRDFKL 753
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 473 LWKHSEIRRK--YTVDDNIYIQGNKDIGNLWSKRNVGLNDTTTF 598
L+K+SEI + + + D ++ +KD G +W + + L D F
Sbjct: 222 LYKNSEIMHEIAWVIFDEVHYMRDKDRGVVWEETLILLPDAIRF 265
>SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 479 KHSEIRRKYTVDDNIYIQG 535
KHS + R + VD+N+ ++G
Sbjct: 284 KHSRVHRLFVVDENLKLEG 302
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +2
Query: 146 LPSRFLPYKSDARM--RTPLPPPETISMPTRA 235
+PS++LPY++ ++ TP+P + MP ++
Sbjct: 441 IPSQYLPYQAGLKVPGNTPIPVKQVGGMPLQS 472
>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 231 GRSIEQPGVHENFQAIRSLRNEMEKKNQI 317
GR+ E PGV E F+A S E ++K ++
Sbjct: 111 GRARELPGVKELFEADMSFIPERQRKQEM 139
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +3
Query: 255 VHENFQAIRSLRNEMEKKNQI 317
+H+N I+ ++N++EKK Q+
Sbjct: 762 IHQNDDEIQVIKNDIEKKRQL 782
>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = +3
Query: 267 FQAIRSLRNEMEKKNQIGNEENVDLPSSTDRKVIYNGGIFPLNEKDK 407
+++++ + +E + +E + +P TD++ IY+ G N K
Sbjct: 102 YKSMKGIYSEANSPADLWEQEAIVIPDITDKETIYSLGKMSYNAYQK 148
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 492 ISLCFHNFLCAVFLHSHSKLKASLGRYSFYLFH 394
IS F N L + + + +L++ R+S +LFH
Sbjct: 325 ISSAFSNLLHCRYFNCNDRLRSFYYRFSSWLFH 357
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 315 IGNEENVDLPSSTDRKVIYNGGIF 386
IG+ V+LPS D +Y GIF
Sbjct: 2220 IGSVFEVELPSKEDHNKVYRLGIF 2243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,490,209
Number of Sequences: 5004
Number of extensions: 52342
Number of successful extensions: 183
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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