Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1029
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0665 - 16774043-16774522 30 1.2
09_04_0459 + 17776421-17776498,17776608-17776668,17776977-177769... 30 1.6
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099... 29 2.2
07_03_1533 + 27523811-27524710 29 2.8
03_02_0251 - 6821612-6823405,6823738-6823878 29 2.8
02_05_0218 + 26860319-26862448 29 2.8
02_05_0219 + 26870970-26873117 29 3.8
08_01_0233 + 1876940-1877509,1907940-1908195,1908290-1908589,190... 28 5.0
04_04_1631 - 34919197-34919205,34919865-34920204,34920418-349207... 28 5.0
04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672... 28 5.0
04_04_0371 + 24771687-24772081,24772139-24772535,24773394-247734... 28 5.0
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349... 28 6.6
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 27 8.7
11_01_0602 - 4788483-4788659,4789106-4789174,4789265-4789742,479... 27 8.7
10_01_0197 + 2148109-2149551 27 8.7
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588... 27 8.7
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 27 8.7
02_01_0764 + 5688851-5688933,5689055-5689589 27 8.7
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 24 9.2
>05_03_0665 - 16774043-16774522
Length = 159
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 164 PYKSDARMRTPLPPPETISMP 226
PY+SD +R P PPP + S P
Sbjct: 7 PYRSDLDLRPPPPPPSSASFP 27
>09_04_0459 +
17776421-17776498,17776608-17776668,17776977-17776996,
17777067-17777129
Length = 73
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +1
Query: 172 IRRADADAATSAGNNLNADEGAASNNQEYMKISKQFAHLEMKWKKRIKSETKKTLTCLHL 351
I + D AT + + D + + Q AHL MK +KSE K +LT H+
Sbjct: 2 IDKEDVKVATKSSITASVDFSVVAKLPNKKWSTMQSAHLSMKKFGVLKSELKNSLTVGHI 61
Query: 352 QI 357
I
Sbjct: 62 DI 63
>01_06_1486 -
37709159-37709377,37709558-37709821,37709903-37709995,
37710387-37710581,37710665-37710763,37710884-37711132,
37711264-37711467,37711543-37711602,37711731-37711913,
37712382-37712999,37713101-37713169,37713275-37713853
Length = 943
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 140 QMLPSRFLPYKSDARMRTPLPPPETISMPTRAQHRTTRST*KFP 271
Q P+ +D+R TP PP+T S+ R + ++ S K P
Sbjct: 121 QQTPTTTAAAAADSRSPTPAAPPQTASVSQREEEKSLASVVKRP 164
>07_03_1533 + 27523811-27524710
Length = 299
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +3
Query: 171 NPTRGCG-----RRYLRRKQSQCRRGRSIEQPGVHE 263
N TRG G RR+ RR++S+ RR R PGV E
Sbjct: 159 NHTRGSGGVVVRRRHRRRRRSRRRRRRHRHHPGVRE 194
>03_02_0251 - 6821612-6823405,6823738-6823878
Length = 644
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 178 RADADAATS-AGNNLNADEGAASNNQEYMKISK 273
+A+ TS A NN+NA G +S+N+ Y+ IS+
Sbjct: 519 KANTKTTTSPAANNINAGGGGSSDNRGYVPISE 551
>02_05_0218 + 26860319-26862448
Length = 709
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +1
Query: 112 PPEIGEIALSDAPVAIFTLQIRRADADAATSAGNNLNADEGAASNNQEYMKISKQF 279
PP G + + A A L A A AT AGN++ A E A NQ+ ++ K F
Sbjct: 331 PPIRGAMKSTAAEAAQQQLLDELAAAAKATEAGNSVGAREILARLNQQLPQLGKPF 386
>02_05_0219 + 26870970-26873117
Length = 715
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +1
Query: 112 PPEIGEIALSDAPVAIFTLQIRRADADAATSAGNNLNADEGAASNNQEYMKISKQF 279
PP G + + A A L A A AT AGN++ A E A NQ+ + K F
Sbjct: 337 PPIRGAMKTTAAEAAQQQLLDELAAAAKATEAGNSVGAREILARLNQQLPPLGKPF 392
>08_01_0233 +
1876940-1877509,1907940-1908195,1908290-1908589,
1908777-1908939,1908958-1908994,1910122-1910742
Length = 648
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 421 WAVFVLSFSFRGKIPPLYMTFLSVDE 344
W+VF L F+ G +PP F+ V E
Sbjct: 55 WSVFFLPFAMAGLVPPFSSFFMDVME 80
>04_04_1631 -
34919197-34919205,34919865-34920204,34920418-34920726,
34920781-34921307,34921700-34921852,34922102-34922186,
34922360-34922364
Length = 475
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 234 RSIEQPGVHENFQAIRSLRNEMEKKNQIGNEENVDLPSSTDRKVIYNGGIFPLNE 398
R ++ G+H F+ L+ +K +GN++ D + T K+ +NG F E
Sbjct: 248 RPLKSMGIH--FKGSSGLQKPEKKGEWVGNKKGKDDKNETGGKIKWNGKCFRCQE 300
>04_04_0788 +
28064684-28066584,28066692-28066815,28066908-28067285,
28067286-28067488,28067615-28067897
Length = 962
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 170 KSDARMRTPLPPPETISMPTRAQHRTTRS 256
+S R R PPP TIS PT A+ +S
Sbjct: 229 RSKTRSRLMDPPPPTISHPTEAERNDRKS 257
>04_04_0371 +
24771687-24772081,24772139-24772535,24773394-24773435,
24773571-24774305,24775357-24775480,24775613-24776580,
24776917-24776925
Length = 889
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 142 DAPVAIFTLQIRRADADAATSAGNNLNADEGAASNNQEYMKISKQFAHLEM 294
D+ A+F L R+ D + N +N S+NQ++ +++FA E+
Sbjct: 241 DSCCAVFELVTRKEKPDFSAEMDNAVNLKATKGSSNQKFYTENQKFAFTEI 291
>02_01_0486 -
3495792-3496034,3496862-3496934,3497128-3497422,
3497585-3497759,3498349-3498795,3499994-3500053
Length = 430
Score = 27.9 bits (59), Expect = 6.6
Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
Frame = +3
Query: 36 RYGRDSITRNITYKSSQHANGDNRVTTRDWRNRIIRCSRRDFYLTNPTRGCGRRYLRRKQ 215
R G D+ + ++ ++S+ N ++ R + + + +R +P+ R L +
Sbjct: 19 RAGEDAKSDGVSCQNSRRPNLSLQIPNRAFDDTLPTSTRIKI---SPSPNSARSGLPPRP 75
Query: 216 SQCRRGRSIEQPGVHENFQAIRSLRNEMEKKNQIGN---EENVDLPSSTDRKVIYNGGIF 386
+ R SI +F+A SL++ + I + + ++T R + I
Sbjct: 76 NSTRTKSSIRGIIPQRSFKAKSSLQDGDQTILLIPDTPSSSGQQVKATTSRSFSFTKVIN 135
Query: 387 PLNEKDKTNTAQVMPLVWNG-CVETRHKENYGSTVKYEENTQL 512
L+ K +T++ V P+ +G H +N STVK E TQ+
Sbjct: 136 SLSAK-RTHSLPVTPVAASGPSSHEGHADNLPSTVKNEVETQI 177
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +3
Query: 333 VDLPSSTDRKVIYNGGIFPLNEKDKTNTAQVMPLVWNGCVETRHKENYGSTVKYEENTQL 512
+DLP++TD ++N + P + + + R E GSTVK E + L
Sbjct: 651 IDLPAATDAPNLFNENVPPSVLCNISKDQNSLENYVASIAHVRSWEYSGSTVKKEFGSSL 710
Query: 513 MIIYTFR 533
IY R
Sbjct: 711 RRIYCTR 717
>11_01_0602 -
4788483-4788659,4789106-4789174,4789265-4789742,
4791348-4791892
Length = 422
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 230 SSALRLFPAEVAASASARRICKVKIATGASDNAISPISGGNSVIAVR 90
SSA A VAAS +ARR K K+ +++ + G +V AV+
Sbjct: 164 SSARMSAAARVAASTAARRTVKEKLMAAETEDVSAADEGLPAVTAVK 210
>10_01_0197 + 2148109-2149551
Length = 480
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 239 AAPSSALRLFPAEVAASASARRICKVKIATGASDNAISP 123
A+ SS LRL P S RR+ KV + +D+ + P
Sbjct: 396 ASSSSPLRLMPPHCEGYGSKRRLTKVMFSDLIADSIVVP 434
>03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,
5882570-5882618,5882703-5882941,5883073-5883174,
5883634-5883862
Length = 1529
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 172 IRRADADAATSAGNNLNADEGAASNNQEYMKISKQFAH 285
+R D D A AG L + E + +Q K ++FAH
Sbjct: 1091 MRHVDVDPANIAGKKLKSPETGSDASQVDWKSGQRFAH 1128
>02_04_0371 +
22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 419 PSDAFSLEWLCRNTAQRKLWKHSEIRRKYTVDDNIYIQ 532
P +L+WLC + L+ + RK T D +I ++
Sbjct: 135 PPSTKALKWLCTQFKRSSLFPQFYLSRKQTTDSSIQLE 172
>02_01_0764 + 5688851-5688933,5689055-5689589
Length = 205
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/68 (33%), Positives = 35/68 (51%)
Frame = +1
Query: 175 RRADADAATSAGNNLNADEGAASNNQEYMKISKQFAHLEMKWKKRIKSETKKTLTCLHLQ 354
R + D AT+A + ++ G S N +S+ L K +K K+ + +LTCL L
Sbjct: 67 RNSTGDLATAADQDARSNGG--SRNSSAGNLSQI---LSAKLRKCCKAPSP-SLTCLRLD 120
Query: 355 IEKSYIMV 378
EKS+I V
Sbjct: 121 PEKSHIGV 128
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 23.8 bits (49), Expect(2) = 9.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 149 PSRFLPYKSDARMRTPLPPP 208
P F P S A R P PPP
Sbjct: 21 PKPFKPLSSAAPFRRPSPPP 40
Score = 21.8 bits (44), Expect(2) = 9.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 200 PPPETISMPTRAQHRTT 250
PPPET+ P + TT
Sbjct: 80 PPPETLEQPEPSTTTTT 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,730,629
Number of Sequences: 37544
Number of extensions: 317837
Number of successful extensions: 1201
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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