Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1029
(601 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3) 35 0.044
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26) 34 0.10
SB_48502| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_1740| Best HMM Match : Protamine_P2 (HMM E-Value=0.9) 33 0.18
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_56286| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_20458| Best HMM Match : LicD (HMM E-Value=2.9e-07) 31 0.54
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10) 29 2.9
SB_27694| Best HMM Match : CPSase_L_D3 (HMM E-Value=8) 29 2.9
SB_21866| Best HMM Match : UCH (HMM E-Value=0) 29 2.9
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12) 29 3.8
SB_38918| Best HMM Match : DUF997 (HMM E-Value=2.3) 29 3.8
SB_284| Best HMM Match : rve (HMM E-Value=0.001) 29 3.8
SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14) 28 5.0
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 28 5.0
SB_57969| Best HMM Match : zf-CCHC (HMM E-Value=0.0097) 28 6.6
SB_59553| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_16291| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-11) 27 8.8
>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2839
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/77 (24%), Positives = 42/77 (54%)
Frame = +3
Query: 192 RRYLRRKQSQCRRGRSIEQPGVHENFQAIRSLRNEMEKKNQIGNEENVDLPSSTDRKVIY 371
+R +++SQ RR R +E+ + E + + R E+E+KN++ EN+++ S + + +
Sbjct: 2384 QRQEEQRESQ-RRARLLEEQRLREEREEMERARRELEEKNRLAERENLNMEYSENERAME 2442
Query: 372 NGGIFPLNEKDKTNTAQ 422
+ +N D + +Q
Sbjct: 2443 SDKFQNVNRLDLSQFSQ 2459
>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
Length = 225
Score = 35.1 bits (77), Expect = 0.044
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 69 TYKSSQHANGD-NRVTTRDWRNRIIRCSRRDFYLTNPTRGCGRRYLR 206
T +SS +N N + R W+NR I C RRD GCG LR
Sbjct: 100 TLQSSATSNFQLNLLQCRSWQNRYISCDRRDASSGEGKEGCGHLQLR 146
>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
Length = 280
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 102 NRVTTRDWRNRIIRCSRRDFYLTNPTRGCGRRYLR 206
N + R W+NR I C RRD GCG LR
Sbjct: 153 NLLQCRSWQNRYISCDRRDASSGEGKEGCGHLQLR 187
>SB_48502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 33.1 bits (72), Expect = 0.18
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +3
Query: 366 IYNGGIFPLNEKDKTNTAQVMPLVWNGCV-ETRH-KENYGSTVKYEENTQLMIIYTFRVT 539
IY+G F NE+DKTN ++M L+ CV ET E Y + +EN + + + +
Sbjct: 4 IYDGLPFA-NEEDKTNINRIMELMEAHCVGETNEIYERYLFNRRNQENGESVESFIAALR 62
Query: 540 KISETYG 560
+++TYG
Sbjct: 63 SLAKTYG 69
>SB_1740| Best HMM Match : Protamine_P2 (HMM E-Value=0.9)
Length = 268
Score = 33.1 bits (72), Expect = 0.18
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Frame = +3
Query: 78 SSQHANGDNRVTTRDWRNRIIRCSRRDFYLTNPTRGCGRRYLRRKQSQCR-----RGRSI 242
S Q N +N + +R R R IR RR F + RR++RR+ CR R R +
Sbjct: 142 SVQDPNNNNNINSRSRRRRFIR--RRSFARS-------RRFVRRRSFACRRRFVHRRRFV 192
Query: 243 EQPGVHENFQAIRSLRNEMEKKNQIGNEEN 332
+F R ME +N GN N
Sbjct: 193 RYASRRHSFCPSHCRRGIMELQNDPGNNNN 222
>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2988
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/60 (21%), Positives = 25/60 (41%)
Frame = +2
Query: 410 EYRPSDAFSLEWLCRNTAQRKLWKHSEIRRKYTVDDNIYIQGNKDIGNLWSKRNVGLNDT 589
+Y+ D S WL ++ + +R ++ + +YI N W N+ +N T
Sbjct: 584 QYKEGDLVSCNWLINDSKNATRYSDCSVRHEFKYNGTVYIMVNISNPVSWMSENITINVT 643
>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +3
Query: 117 RDWRNRIIRCSRRDFYLTNPTRGCGRRYLR 206
R W+NR I C RRD GCG LR
Sbjct: 838 RSWQNRHISCDRRDASSGEGKEGCGHLQLR 867
>SB_56286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 372 NGGIFPLNEKDKTNTAQVMPLVWNGCVETRHKENYGSTVKYEEN 503
N GIFPL E + +P WN +E + +NY K E++
Sbjct: 303 NAGIFPLKEIEFEGFIFPVPSTWNKMLEKSYGKNYMKVPKNEKD 346
>SB_20458| Best HMM Match : LicD (HMM E-Value=2.9e-07)
Length = 375
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 372 NGGIFPLNEKDKTNTAQVMPLVWNGCVETRHKENYGSTVKYEEN 503
N GIFPL E + +P WN +E + +NY K E++
Sbjct: 303 NAGIFPLKEIEFEGFIFPVPSTWNKMLEKSYGKNYMKVPKNEKD 346
>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
Length = 1163
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -2
Query: 579 KPTFRLLHRFPISLLP*MYILSSTVYFLRISLCFHNFLCAVFLHSHS 439
+P+ L H + S + YI S + S+ H+++ ++F H +S
Sbjct: 802 QPSLLLTHHYIFSTITHHYIFSIITHHYIFSIITHHYIFSIFTHHYS 848
>SB_27694| Best HMM Match : CPSase_L_D3 (HMM E-Value=8)
Length = 396
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -3
Query: 134 AISPISGGNSVIAVRVLTRFISNIPSNRITAITE 33
+++P++GGNS+ + ISNIP++ + + +
Sbjct: 138 SVNPVNGGNSISMQAFVVPEISNIPNSHVELVRD 171
>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
Length = 2165
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 431 FSLEWLCRNTAQRKLWKHSEIRRKYTVDDNIYIQGNKDIGNLWS 562
F W C + QR+ K E+ R+ DD + +K +G LWS
Sbjct: 355 FQESWTCASKKQRE--KLLELIRRLAEDDKEGVMAHKVLGLLWS 396
>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
Length = 558
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 258 HENFQAIRSLRNEMEKKNQIGNEENVDLPSSTDRK 362
H +FQ + +E E N+ GN N D P + R+
Sbjct: 300 HHDFQIVSIQESEQEDSNKYGNTTNNDAPLRSGRE 334
>SB_38918| Best HMM Match : DUF997 (HMM E-Value=2.3)
Length = 860
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 428 AFSLEWLCRNTAQRKLWKHSEIRRKYTVDDNIYIQGNKDIGNLWSKRNVGL 580
A S + NTA R+L+ H + ++ DN QG D G+L V L
Sbjct: 409 ATSTTLMVSNTADRRLFMHRSLPQQGLCSDNCNEQGVDDQGSLPQSGTVAL 459
>SB_284| Best HMM Match : rve (HMM E-Value=0.001)
Length = 1201
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +3
Query: 366 IYNGGIFPLNEKDKTNTAQVMPLVWNGCV-ETRH-KENYGSTVKYEENTQLMIIYTFRVT 539
IY+G F NE+DKTN ++M L+ CV ET E Y + +EN + + + +
Sbjct: 74 IYDGLPFA-NEEDKTNINRIMELMEAHCVGETNEIYERYLFNRRNQENGESVESFIAALR 132
Query: 540 KISET 554
I++T
Sbjct: 133 SIAKT 137
>SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1060
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 105 RVTTRDWRNRIIRCSRRDFYLTNPTRGCGRRYLRRKQSQCRRGRSIEQPGVHENFQAIRS 284
+V T+ R RC+R+ Y + +RG +R L R+Q R+G E G H R+
Sbjct: 666 KVRTQRCLLREQRCARKGVY--SESRGAYQRCLLREQRCVRKGVYSESKGAHAKVSTPRA 723
>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
Length = 1104
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = +3
Query: 39 YGRDSITRNITYKSSQHANGDNRVTTRDWRNRIIRCSRRDFYLTNPTRGCGRRYLRRKQS 218
Y S R I Y++ G D R + SR +LT+P+ G LRRK S
Sbjct: 696 YQAKSDIRGIEYQAESDIRGIEYQAKSDIRGIEYQVSRTLLHLTSPSSRLGMGRLRRKNS 755
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 420 QVMPLVWNGCVETRHKENYGSTVKYEENTQLMIIYTF-RVTKISETYGVSGMWA 578
+ P W GCV+ +KE +G+ ++ + +YT V ++ Y W+
Sbjct: 1894 RTQPKPWLGCVDNENKECHGNNLECVGQERTNYVYTLDNVMPLTGNYTEWSAWS 1947
>SB_57969| Best HMM Match : zf-CCHC (HMM E-Value=0.0097)
Length = 410
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +3
Query: 366 IYNGGIFPLNEKDKTNTAQVMPLVWNGCV-ETRH-KENYGSTVKYEENTQLMIIYTFRVT 539
IY+G F NE+DKTN ++M L+ CV ET E Y + +EN + + + +
Sbjct: 74 IYDGLPFA-NEEDKTNINRIMELMEAHCVGETNEIYERYLFNRRNQENGESVESFIAALR 132
Query: 540 KISET 554
+++T
Sbjct: 133 SLAKT 137
>SB_59553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1003
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -3
Query: 233 PSSALRLFPAEVAASASARRICKVKIATGASDNAISPISGGNSVI 99
PS+A L P ++ A+ SAR + +G ++ A+S GGN V+
Sbjct: 544 PSTAPSL-PCDLVAATSARMYLAGQGGSGKTEWAVSMFRGGNVVV 587
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 204 RRKQSQCRRGRSIEQPGVHENFQAIRSLRNEM-EKKNQIGNEE 329
++++S ++ Q V+ENF AIR + E EK N+ +E
Sbjct: 1965 KKRRSSRKKSEDKPQEAVYENFAAIRRFQQECHEKANETAVKE 2007
>SB_16291| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-11)
Length = 423
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 291 NEMEKKNQIGNEENVDLPSSTDRKVIYNGGIFPLNEKDKTNTAQV-MPLVWNGCVETRHK 467
N EK N + + +P+ D+ NGG P N + T Q + V + C E++
Sbjct: 98 NASEKFNHNPSSNHYSIPNPCDKLKCSNGGKCPANYVNNTGECQCELGFVGDTCDESKAI 157
Query: 468 EN 473
+N
Sbjct: 158 KN 159
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,216,211
Number of Sequences: 59808
Number of extensions: 381496
Number of successful extensions: 1395
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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