Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1029
         (601 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089377-1|AAL90115.1|  660|Drosophila melanogaster AT20011p pro...    32   0.69 
AE014296-2783|AAF49427.1|  660|Drosophila melanogaster CG13032-P...    32   0.69 
BT023802-1|AAZ66309.1|  872|Drosophila melanogaster RE68448p pro...    30   2.8  
AY119611-1|AAM50265.1|  773|Drosophila melanogaster LD35363p pro...    30   2.8  
AE014297-1106|AAF54500.1|  872|Drosophila melanogaster CG6241-PA...    30   2.8  
AF011791-1|AAB69991.2| 1107|Drosophila melanogaster Bifocal prot...    29   4.8  

>AY089377-1|AAL90115.1|  660|Drosophila melanogaster AT20011p
           protein.
          Length = 660

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +3

Query: 174 PTRGCGRRYLRRKQSQCRRGRSIEQPGVHENFQAIRSLRNEMEKKNQIGNEENVD 338
           PT+   ++ LR+K S+C + +      +HE  Q I  L+  ++  N++ N   +D
Sbjct: 50  PTKPESKK-LRKKLSECEQEKQSLAQAIHEKNQEISDLKKSVDSLNEVLNSVPID 103


>AE014296-2783|AAF49427.1|  660|Drosophila melanogaster CG13032-PA
           protein.
          Length = 660

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +3

Query: 174 PTRGCGRRYLRRKQSQCRRGRSIEQPGVHENFQAIRSLRNEMEKKNQIGNEENVD 338
           PT+   ++ LR+K S+C + +      +HE  Q I  L+  ++  N++ N   +D
Sbjct: 50  PTKPESKK-LRKKLSECEQEKQSLAQAIHEKNQEISDLKKSVDSLNEVLNSVPID 103


>BT023802-1|AAZ66309.1|  872|Drosophila melanogaster RE68448p
           protein.
          Length = 872

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = +3

Query: 99  DNRVTTRDWRNRIIRCSRR-DFYLTNPTRGCGRRYLRRKQSQCRRGRSIEQPGVHENFQA 275
           +  + T  W + + R  +R DF  T PT   G RYL+R   +  R   +E   ++  F  
Sbjct: 640 NTEIKTETWISELKRKEKRPDFRFTQPTGTYGARYLKRITMRDARRVQLE---INNPFWD 696

Query: 276 IRSLRNEMEKKNQIGNEENVDLPSSTDRKVIYNGGIFPLN 395
           +    + + K     N+  + L S +  +    G + PLN
Sbjct: 697 VTETPSFLLKL----NDNEIPLDSLSSLQTFEEGTMDPLN 732


>AY119611-1|AAM50265.1|  773|Drosophila melanogaster LD35363p
           protein.
          Length = 773

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = +3

Query: 99  DNRVTTRDWRNRIIRCSRR-DFYLTNPTRGCGRRYLRRKQSQCRRGRSIEQPGVHENFQA 275
           +  + T  W + + R  +R DF  T PT   G RYL+R   +  R   +E   ++  F  
Sbjct: 541 NTEIKTETWISELKRKEKRPDFRFTQPTGTYGARYLKRITMRDARRVQLE---INNPFWD 597

Query: 276 IRSLRNEMEKKNQIGNEENVDLPSSTDRKVIYNGGIFPLN 395
           +    + + K     N+  + L S +  +    G + PLN
Sbjct: 598 VTETPSFLLKL----NDNEIPLDSLSSLQTFEEGTMDPLN 633


>AE014297-1106|AAF54500.1|  872|Drosophila melanogaster CG6241-PA
           protein.
          Length = 872

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = +3

Query: 99  DNRVTTRDWRNRIIRCSRR-DFYLTNPTRGCGRRYLRRKQSQCRRGRSIEQPGVHENFQA 275
           +  + T  W + + R  +R DF  T PT   G RYL+R   +  R   +E   ++  F  
Sbjct: 640 NTEIKTETWISELKRKEKRPDFRFTQPTGTYGARYLKRITMRDARRVQLE---INNPFWD 696

Query: 276 IRSLRNEMEKKNQIGNEENVDLPSSTDRKVIYNGGIFPLN 395
           +    + + K     N+  + L S +  +    G + PLN
Sbjct: 697 VTETPSFLLKL----NDNEIPLDSLSSLQTFEEGTMDPLN 732


>AF011791-1|AAB69991.2| 1107|Drosophila melanogaster Bifocal
           protein.
          Length = 1107

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 231 GRSIEQPGVHENFQAIRSLRNEMEKKNQIGNEENVDLPSSTDRKVIYNGG 380
           GRS   PG   +F    ++ +  +K+N IG+EE  +  S ++      GG
Sbjct: 76  GRSNAAPGAIADFTEPATISSTSQKRNMIGSEEKSEKSSISNTNSDSTGG 125


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,249,160
Number of Sequences: 53049
Number of extensions: 538528
Number of successful extensions: 2259
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2259
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2441585082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)