Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1029
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.57 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 104 PSYHQRLAKSHYQMLPSRFLPYKSDARMRTPLPPPETISMPTR 232
           P   ++LA    Q  P+  +PY + A ++T    PET  + TR
Sbjct: 113 PLLAEKLAAPSSQASPTS-IPYATRAEIKTESIQPETTKVDTR 154


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 469 SLCRVSTQPFQTKGITWAVFVLSFSFRGKIPPLYM 365
           S CR   + F      WA+  +SFS  G +  L++
Sbjct: 640 SACRDIPEEFLRPESGWAIGAMSFSATGILITLFV 674


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 258 HENFQAIRSLRNEMEKKN 311
           HE FQ++ +   EME  N
Sbjct: 488 HEEFQSLNNAVGEMEATN 505


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 427 ITWAVFVLSFSFRGKIP 377
           + WA+F    S R ++P
Sbjct: 81  LAWAIFYFFMSMRSELP 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,301
Number of Sequences: 438
Number of extensions: 3691
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)