Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1029
(601 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19520.1 68417.m02872 disease resistance protein (TIR-NBS-LRR... 32 0.25
At1g27370.2 68414.m03335 squamosa promoter-binding protein-like ... 31 0.58
At1g27370.1 68414.m03334 squamosa promoter-binding protein-like ... 31 0.58
At5g11210.1 68418.m01310 glutamate receptor family protein (GLR2... 29 1.8
At4g27540.1 68417.m03956 prenylated rab acceptor (PRA1) protein-... 29 1.8
At3g28790.1 68416.m03593 expressed protein 29 2.4
At1g15710.1 68414.m01885 prephenate dehydrogenase family protein... 29 2.4
At5g11180.1 68418.m01307 glutamate receptor family protein (GLR2... 28 4.1
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 27 7.2
At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase, puta... 27 7.2
At5g40450.1 68418.m04905 expressed protein 27 9.5
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai... 27 9.5
At3g14320.1 68416.m01811 zinc finger (C3HC4-type RING finger) fa... 27 9.5
At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family pr... 27 9.5
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)... 27 9.5
>At4g19520.1 68417.m02872 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1129
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1
Query: 34 SVMAVILLLGILLINRVSTRTAITELPPEIGEIALSD 144
S + +I+ L + LI TAI ELPP IG++AL D
Sbjct: 883 SKLEIIVDLPLNLIELYLAGTAIRELPPSIGDLALLD 919
>At1g27370.2 68414.m03335 squamosa promoter-binding protein-like 10
(SPL10) identical to squamosa promoter binding
protein-like 10 [Arabidopsis thaliana] GI:5931669;
contains Pfam profile PF03110: SBP domain
Length = 396
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 378 GIFPLNEKDKTNTAQVMPLVWNG-CVETRHKENYGSTVKYE 497
G+FPLN + + Q ++WNG + TR +E Y YE
Sbjct: 252 GVFPLNSERVFDRRQHTSMLWNGLSLNTRSEEKYTWGTTYE 292
>At1g27370.1 68414.m03334 squamosa promoter-binding protein-like 10
(SPL10) identical to squamosa promoter binding
protein-like 10 [Arabidopsis thaliana] GI:5931669;
contains Pfam profile PF03110: SBP domain
Length = 396
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 378 GIFPLNEKDKTNTAQVMPLVWNG-CVETRHKENYGSTVKYE 497
G+FPLN + + Q ++WNG + TR +E Y YE
Sbjct: 252 GVFPLNSERVFDRRQHTSMLWNGLSLNTRSEEKYTWGTTYE 292
>At5g11210.1 68418.m01310 glutamate receptor family protein (GLR2.5)
plant glutamate receptor family, PMID:11379626
Length = 829
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Frame = +1
Query: 88 TRTAITELPPEIGEIALS-----DAPVAIFTLQIRRADADAATSAGNNLNADEGAASNNQ 252
TR I + P++G S D + + AD + G + + +
Sbjct: 153 TRVFIVHMLPDLGSRLFSIAKEIDMLSKGYVWIVTNGIADLMSIMGESSLVNMHGVLGVK 212
Query: 253 EYMKISKQFAHLEMKWKKRIKSETKKTLTC 342
Y SK+ HLE +W+KR E C
Sbjct: 213 TYFAKSKELLHLEARWQKRFGGEELNNFAC 242
>At4g27540.1 68417.m03956 prenylated rab acceptor (PRA1)
protein-related contains Pfam profile PF03208: PRA1
family protein
Length = 241
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -3
Query: 254 SWLFDAAPSSAL--RLFPAEVAASASARRICKVKIATGASDNAISPISGG 111
SWL D+ L R A AAS+SA + ASD+ +S I+GG
Sbjct: 19 SWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVVSSITGG 68
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 181 ADADAATSAGNNLNADEGAASNNQEYMKISKQFAHLEMKWKKRIKSETKKTLTCLHLQIE 360
A A A+ SAG + +A+E AAS +E S + K ++++T + +E
Sbjct: 403 AGASASASAGASASAEESAASQKKESNSKSSSSSSSTTS-VKEVETQTSSEVNSFISNLE 461
Query: 361 KSY 369
K Y
Sbjct: 462 KKY 464
>At1g15710.1 68414.m01885 prephenate dehydrogenase family protein
contains Pfam profile: PF02153 prephenate dehydrogenase
Length = 358
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +3
Query: 291 NEMEKKNQIGNEENVDLPSSTDRKVIYNGGIFPLNEKDKTNTA 419
++ +K G E V P T++K++ +GG+ P+N+ ++++
Sbjct: 313 HQQYRKQMFGGE--VQSPKKTEQKLLNDGGVVPMNDISSSSSS 353
>At5g11180.1 68418.m01307 glutamate receptor family protein (GLR2.6)
plant glutamate receptor family, PMID:11379626
Length = 906
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Frame = +1
Query: 88 TRTAITELPPEIGEIALSDAP-VAIFTLQ----IRRADADAATSAGNNLNADEGAASNNQ 252
TR I + P++G S A + + T + AD + G + + +
Sbjct: 226 TRVFIVHMLPDLGSRLFSIAKEIGMMTKGYVWIVTNGIADQMSVMGESSLENMHGVLGVK 285
Query: 253 EYMKISKQFAHLEMKWKKRIKSETKKTLTC 342
Y SK+ +LE +W+KR E C
Sbjct: 286 TYFSRSKELMYLETRWRKRFGGEELNNFEC 315
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 104 PSYHQRLAKSHYQMLPSRFLPYKSDARMRTPL 199
P+ HQR + + P ++P S +R TPL
Sbjct: 76 PNLHQRFLQRFLEPSPEEYVPETSSSRKYTPL 107
>At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase,
putative / neoxanthin cleavage enzyme, putative /
carotenoid cleavage dioxygenase, putative similar to
GB:CAB10168 from [Lycopersicon esculentum] (J. Exp. Bot.
47, 2111-2112 (1997)); similar to 9-cis-epoxycarotenoid
dioxygenase [Phaseolus vulgaris][GI:6715257]
Length = 577
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 282 SLRNEMEKKNQIGNEENVDLPSSTDRKVIYNGGIFPLNEKDKTNTAQVM 428
++ +++E I E+N LP TD V +G P+NE N +V+
Sbjct: 72 TMLDKIESSIVIPMEQNRPLPKPTDPAVQLSGNFAPVNECPVQNGLEVV 120
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 209 PAEVAASASARRICKVKIATGASDNAISPISGGNSVI 99
PAEV S+ + KV ++T D S GN++I
Sbjct: 22 PAEVILEKSSMEVQKVNLSTVLDDEITSGADRGNNII 58
>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
Pfam domains PF00628: PHD-finger and PF00855: PWWP
domain; identical to cDNA trithorax 3 (ATX3) partial cds
GI:15217142
Length = 799
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 217 LNADEGAASNNQEYMKISKQFAHLEMKWKKRIKSETKKTLTCLH 348
++ D A ++Q+Y S+ A + +K KR K + L C H
Sbjct: 297 ISPDSSATESDQDYGPASRFQALMPLKSLKRTKDSQPEELLCKH 340
>At3g14320.1 68416.m01811 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = +3
Query: 222 CRRGRSIEQPGVHENFQAIRSLRNEMEKKNQIGNEENVDLPSSTDRKVIYNGGIFPLNEK 401
CR+ ++Q N+ + +E + D P++TD +I +GG NE
Sbjct: 129 CRKRVCLKQSRTRPELGGRDKSFNQNHDQTSEHHEFSTDPPTNTDTAIIEDGGCGEANEG 188
Query: 402 DKTNTAQVMPL 434
TA V+ +
Sbjct: 189 QPELTAVVIDI 199
>At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family
protein / F-box family protein contains Pfam profiles:
PF00646 F-box domain, PF00010 helix-loop-helix
DNA-binding domain
Length = 828
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/74 (27%), Positives = 31/74 (41%)
Frame = +3
Query: 147 SRRDFYLTNPTRGCGRRYLRRKQSQCRRGRSIEQPGVHENFQAIRSLRNEMEKKNQIGNE 326
SR D +++ + ++ + SQ R R I+ G + A S R GNE
Sbjct: 3 SREDSFISKEKKSTMKKEKQAIASQRNRRRVIKNRGNGKRLIASLSQRKRRRIPRGRGNE 62
Query: 327 ENVDLPSSTDRKVI 368
+ V PSS V+
Sbjct: 63 KAVFAPSSLPNDVV 76
>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
Similar to Arabidopsis luminal binding protein
(gb|D89342); contains Pfam domain PF00012: dnaK protein
Length = 678
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +1
Query: 94 TAITELPPEIGEIALSDAPVAIFTLQIRRADADAATSAGNNLNADEGAASNN--QEYMKI 267
T I P + +I ++ A LQ++ D A TS + D+G + +E ++
Sbjct: 507 TGILPAPRGVPQIEVTFEVDANGILQVKAEDKVAKTSQSITITNDKGRLTEEEIEEMIRE 566
Query: 268 SKQFAHLEMKWKKRIKSETK 327
+++FA + K++I + K
Sbjct: 567 AEEFAEEDKIMKEKIDARNK 586
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,817,343
Number of Sequences: 28952
Number of extensions: 264047
Number of successful extensions: 907
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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