Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1028
         (626 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9PQ08 Cluster: Unique hypothetical; n=2; cellular orga...    34   2.4  
UniRef50_Q2GGL4 Cluster: Putative uncharacterized protein; n=1; ...    34   2.4  
UniRef50_Q1FJA7 Cluster: VanZ like protein precursor; n=1; Clost...    33   7.4  
UniRef50_Q9AVZ6 Cluster: Cell division cycle 2 homolog; n=1; Gui...    33   7.4  
UniRef50_Q246C5 Cluster: Glucosamine-6-phosphate isomerase/6-pho...    32   9.8  

>UniRef50_Q9PQ08 Cluster: Unique hypothetical; n=2; cellular
            organisms|Rep: Unique hypothetical - Ureaplasma parvum
            (Ureaplasma urealyticum biotype 1)
          Length = 4688

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 203  KFGLKND*KNVWLDSCNSLTTGEPYKIEINLHKLLNIFFFQNIESNMYLTN 51
            K  + N   NV LD+ NS+ +   +  ++  HKL+NI    N+ +N    N
Sbjct: 4059 KNNINNSENNVILDNTNSINSNYEFTTKVGDHKLINITSSNNVNTNSQTIN 4109


>UniRef50_Q2GGL4 Cluster: Putative uncharacterized protein; n=1;
           Ehrlichia chaffeensis str. Arkansas|Rep: Putative
           uncharacterized protein - Ehrlichia chaffeensis (strain
           Arkansas)
          Length = 301

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 374 DNDDMVILLILYNKNHIVDFKHLKYIIQN 460
           DNDD  ++  + +KNH+ D  +L+Y +QN
Sbjct: 43  DNDDAELICNMIDKNHVQDLLYLRYYVQN 71


>UniRef50_Q1FJA7 Cluster: VanZ like protein precursor; n=1;
           Clostridium phytofermentans ISDg|Rep: VanZ like protein
           precursor - Clostridium phytofermentans ISDg
          Length = 233

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +1

Query: 40  ISNKLVRYIFDSIFWKKKMFRSLCRFISILYGSPVVKLLQESNQTFFQSFFKPNLIHLFP 219
           I++ L+   F  I WK+   R+    I + Y   ++ LL  S   FF++ F  N+   F 
Sbjct: 59  IASSLLSSSFQEIKWKQYSMRAGLLLIFVFYCLILLNLLFTSRHFFFENAFSSNIKRRFM 118

Query: 220 IKTN 231
             TN
Sbjct: 119 TGTN 122


>UniRef50_Q9AVZ6 Cluster: Cell division cycle 2 homolog; n=1;
           Guillardia theta|Rep: Cell division cycle 2 homolog -
           Guillardia theta (Cryptomonas phi)
          Length = 295

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +1

Query: 31  IFYISNKLVRY-IFDSIF--WKKKMFRSLCRFISILYGSPVVKLLQESNQTFFQSFFKPN 201
           I YI  KL+ Y  +  +F   K K+ +  C+ I I Y +  +K    S   F    F PN
Sbjct: 8   IKYIKKKLIDYGTYGKVFEMMKMKIKKCACKEIEIYYSNNSLKKEYISEVRFLSYIFHPN 67

Query: 202 LIHL 213
           LI L
Sbjct: 68  LIFL 71


>UniRef50_Q246C5 Cluster: Glucosamine-6-phosphate
           isomerase/6-phosphogluconolactonase family protein; n=8;
           cellular organisms|Rep: Glucosamine-6-phosphate
           isomerase/6-phosphogluconolactonase family protein -
           Tetrahymena thermophila SB210
          Length = 782

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = +1

Query: 145 VKLLQESNQTFFQS-FFKPNLIHLFPI-KTNPIY*DIHYGFK*A*NSINTITFFSPYH-- 312
           VK +   N  FFQS FF    ++   + K      D+ Y F    N I +  FF  YH  
Sbjct: 18  VKQINMENLPFFQSIFFYHTFLNESSLEKRRDKQKDLEYSFTQLTNQIQSAIFFKYYHQK 77

Query: 313 KINKNQHKLSGQ 348
           KI  N  KL  Q
Sbjct: 78  KIQSNNKKLKNQ 89


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,167,802
Number of Sequences: 1657284
Number of extensions: 11032050
Number of successful extensions: 22466
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22460
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)