Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1028
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.55 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.0  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   9.0  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   9.0  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 291 YFFQSLPQDQQKSTQTFWPNIILHNYETTTTIW 389
           Y FQSL     K+    W NI++   + + TIW
Sbjct: 605 YIFQSLSPTIVKNDNESWKNIVMELIKASETIW 637


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 377  NDDMVILLILYNKNHIVDFKHLKYIIQNGYTY*IL 481
            ND+  I  +L   + IVDF HL + I  G  Y IL
Sbjct: 963  NDESAIFSVL---DDIVDFNHLTWSILFGENYIIL 994


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 467 YSRFE*CILNA*SLQCDFYYIK*VELPY-RRCRFIIMQNNVWP 342
           Y  +E    N  +L   FY +  V+LP+ R+  F++M NN++P
Sbjct: 394 YDYYEHVKNNPNTLISQFYGLHRVKLPFGRKIHFVVM-NNLFP 435


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 372 FHNYAK*CLARKFVLIFVDLVVRTEKSNRV 283
           F N+A     RKFV+ +V L+++ E  +R+
Sbjct: 148 FVNHALCAALRKFVMDYVVLIMQCENQSRI 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,224
Number of Sequences: 5004
Number of extensions: 51717
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)