Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1028
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0059 - 18724619-18725053                                         29   3.0  
05_04_0138 - 18350298-18350579,18350648-18350878,18350977-183512...    27   9.2  

>11_05_0059 - 18724619-18725053
          Length = 144

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 95  CLEVCADLFRFYMAHPLLSC 154
           CL +C D FRFY+  P+LSC
Sbjct: 101 CLVLCFD-FRFYLQAPVLSC 119


>05_04_0138 -
           18350298-18350579,18350648-18350878,18350977-18351253,
           18351307-18351487,18351612-18351651
          Length = 336

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 374 DNDDMVILLILYNKNHIVD-FKHLKYI 451
           +NDD+V +L   +K H+V+ FKH K I
Sbjct: 210 ENDDVVRILTTRSKPHLVETFKHYKEI 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,619,113
Number of Sequences: 37544
Number of extensions: 244846
Number of successful extensions: 355
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)