Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1028
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46984| Best HMM Match : Exo_endo_phos (HMM E-Value=4.2e-09)         27   9.4  
SB_43221| Best HMM Match : PHF5 (HMM E-Value=2)                        27   9.4  
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   9.4  
SB_32796| Best HMM Match : MSG (HMM E-Value=2.7)                       27   9.4  
SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17)                27   9.4  
SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)              27   9.4  
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_30549| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-08)                 27   9.4  

>SB_46984| Best HMM Match : Exo_endo_phos (HMM E-Value=4.2e-09)
          Length = 476

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 76  IFWKKKMFRSLCRFISILYGSPVVKLL 156
           +FWKKK F+ LC+     Y +  +K L
Sbjct: 410 LFWKKKKFKKLCKRKKYQYRASGIKNL 436


>SB_43221| Best HMM Match : PHF5 (HMM E-Value=2)
          Length = 361

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 76  IFWKKKMFRSLCRFISILYGSPVVKLL 156
           +FWKKK F+ LC+     Y +  +K L
Sbjct: 266 LFWKKKKFKKLCKRKKYQYRASGIKNL 292


>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1858

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 76   IFWKKKMFRSLCRFISILYGSPVVKLL 156
            +FWKKK F+ LC+     Y +  +K L
Sbjct: 1180 LFWKKKKFKKLCKRKKYQYRASGIKNL 1206


>SB_32796| Best HMM Match : MSG (HMM E-Value=2.7)
          Length = 270

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 76  IFWKKKMFRSLCRFISILYGSPVVKLL 156
           +FWKKK F+ LC+     Y +  +K L
Sbjct: 93  LFWKKKKFKKLCKRKKYQYRASGIKNL 119


>SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17)
          Length = 1178

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 76   IFWKKKMFRSLCRFISILYGSPVVKLL 156
            +FWKKK F+ LC+     Y +  +K L
Sbjct: 1124 LFWKKKKFKKLCKRKKYQYRASGIKNL 1150


>SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)
          Length = 836

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 76  IFWKKKMFRSLCRFISILYGSPVVKLL 156
           +FWKKK F+ LC+     Y +  +K L
Sbjct: 537 LFWKKKKFKKLCKRKKYQYRASGIKNL 563


>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1317

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 76  IFWKKKMFRSLCRFISILYGSPVVKLL 156
           +FWKKK F+ LC+     Y +  +K L
Sbjct: 900 LFWKKKKFKKLCKRKKYQYRASGIKNL 926


>SB_30549| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-08)
          Length = 290

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 318 DLVVRTEKSNRVYTISSLFETIMNILIYGIGFYGK*VY*IWF 193
           D+   TE S R+Y   S F   +   +  I  Y K VY IWF
Sbjct: 116 DMAWETEYSFRIYAAMSFFAVGIFPSLTMILLYSKVVYSIWF 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,706,356
Number of Sequences: 59808
Number of extensions: 327611
Number of successful extensions: 504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)