Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1028
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29300.1 68415.m03559 tropinone reductase, putative / tropine...    29   1.9  
At3g42460.1 68416.m04398 hypothetical protein several hypothetic...    28   4.4  
At2g29310.1 68415.m03560 tropinone reductase, putative / tropine...    28   4.4  
At2g29290.1 68415.m03558 tropinone reductase, putative / tropine...    28   4.4  
At1g07450.1 68414.m00795 tropinone reductase, putative / tropine...    28   5.8  

>At2g29300.1 68415.m03559 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 263

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 318 DLVVRTEKSNRVYTISSLFETIMNILIYGIG 226
           D+  R E+   + T+SSLF+  +NIL+  +G
Sbjct: 66  DVTSRPEREKLMQTVSSLFDGKLNILVNNVG 96


>At3g42460.1 68416.m04398 hypothetical protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 202

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 125 IEINLHKLLNIFFFQNIESNMY--LTNLLEI*NMSCKKTAAAD 3
           IE+ +H+  + F+F  I  N +  LTN   I N    KT +A+
Sbjct: 22  IEVTIHRRFSAFYFDKIFENKWIGLTNFKVIPNSDPVKTTSAE 64


>At2g29310.1 68415.m03560 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 262

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 318 DLVVRTEKSNRVYTISSLFETIMNILIYGIG 226
           D+  R ++   + T+SSLF+  +NIL+  +G
Sbjct: 66  DVASRPDREKLMQTVSSLFDGKLNILVNNVG 96


>At2g29290.1 68415.m03558 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 262

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -3

Query: 318 DLVVRTEKSNRVYTISSLFETIMNILIYGIG 226
           D+ +R ++   + T+SSLF+  +NIL+  +G
Sbjct: 66  DVSLREQREKLMETVSSLFQGKLNILVNNVG 96


>At1g07450.1 68414.m00795 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 260

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 318 DLVVRTEKSNRVYTISSLFETIMNILIYGIGFY 220
           D+  R ++   + T+SSLF   +NILI  +G Y
Sbjct: 67  DVSSRPQRVQLMQTVSSLFGAKLNILINNVGKY 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,029,377
Number of Sequences: 28952
Number of extensions: 234250
Number of successful extensions: 395
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)