Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1027
         (528 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0DBN2 Cluster: Chromosome undetermined scaffold_44, wh...    33   3.1  
UniRef50_A0CDW0 Cluster: Chromosome undetermined scaffold_17, wh...    33   3.1  
UniRef50_Q8IJF6 Cluster: Putative uncharacterized protein; n=4; ...    33   4.1  

>UniRef50_A0DBN2 Cluster: Chromosome undetermined scaffold_44, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_44, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2774

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -2

Query: 458  YLLHSHYSVYFFLFTSLAYSFIFTLKFHVILLIS*DDLFLTFNVLS 321
            Y+   +  +YF +FTS+A S +FT     +LL+   D+F  F VL+
Sbjct: 2482 YIFFDYEMIYFLIFTSIAISGLFTKTLLALLLL---DVFWRFPVLT 2524


>UniRef50_A0CDW0 Cluster: Chromosome undetermined scaffold_17, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_17, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 4335

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 184  IIKYKLNRSQLAMLK**ICLNAFCTKRFNKY-SGSRTSLPRQQYYWNDNTLKVRNKS 351
            +I+Y  NR  L +LK        C K  N Y  G RT+ PR  +  ND  L++ +++
Sbjct: 1333 VIEYTKNRKMLDILKECHTSLEVCQKGLNSYLEGKRTNFPRFYFLSNDELLEILSET 1389


>UniRef50_Q8IJF6 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 1541

 Score = 33.1 bits (72), Expect = 4.1
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 479 LVKQIRFYLLHSHYSVYFFLFTSLAYSFIFTLKFHVILL 363
           L+  I  +L+ SHY +++F+  +L YSF F   F  I +
Sbjct: 15  LIFSIASWLILSHYIIFYFILFNLIYSFFFFFIFIFIFI 53


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 438,987,798
Number of Sequences: 1657284
Number of extensions: 7749549
Number of successful extensions: 16877
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16823
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33455602480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)