Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1027
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      31   0.080
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.3  
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.3  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    26   3.0  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   9.2  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 31.5 bits (68), Expect = 0.080
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -2

Query: 488 DAFLVKQIRFYLLHSHYSVYFFLFTSLAYSFIFTLKFHVILL 363
           D+ +V    F+   S +S + FLFTSL ++F F L  H  LL
Sbjct: 101 DSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFFFRLCRHKHLL 142


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -1

Query: 522 CLILDFEMINY*CISS*TNSFLFITQSL*CVFFFVHEFGLFVYFYFEISCDIINLL 355
           CL+L F  + +    S + SFLF    +  V+F       F++F+F   C  ++ L
Sbjct: 115 CLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFL 170


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +2

Query: 71  NQVQLPEWLPYINFIMPTSIESYINKKIYLY---SLAIVKLS*NIN*IDH 211
           + + L E   Y+ F  P SI SY+  K YLY    L +V+L   I  I H
Sbjct: 211 SSILLHELQRYLQF-RPLSISSYLYSKRYLYGPEGLTMVQLLSQIENIQH 259


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 79  YLVLMASYVFGMMSLIVTLKLYAF 8
           ++ + ASYV+G++ L++T   Y F
Sbjct: 292 FIAMFASYVYGILYLVLTTIPYTF 315


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 313 YWNDNTLKVRNKSS*EINNIT*NFKVKINE*AKLVNKKKYTL 438
           +WNDN + V + S  + NN+    K  +N+  K+  K+K  L
Sbjct: 180 FWNDNAVIVVSDSESDDNNV--RTKSSLNDHDKVNMKEKRNL 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,988,753
Number of Sequences: 5004
Number of extensions: 37472
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)