Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1027
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47742| Best HMM Match : Myotoxins (HMM E-Value=8)                   29   2.4  
SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)                 27   7.2  
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.2  

>SB_47742| Best HMM Match : Myotoxins (HMM E-Value=8)
          Length = 69

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +1

Query: 250 FCTKRFNKYSGSRTSLPRQQYYWNDNTLKVRNKSS*EINNIT*NFKVKINE*AKLV 417
           F  ++ +K +G+R  +     +W +N L+ R+ SS E  N   N++ K N+ A  V
Sbjct: 15  FVPEKLSKPTGARAIIRELHTFWRENNLRARDISSFE--NKRRNWREKCNKTANSV 68


>SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)
          Length = 469

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 71  NQVQLPEWLPYINFIMPTSI 130
           N++Q   W+PY  F++P  +
Sbjct: 406 NEIQFENWIPYFCFVLPLEL 425


>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1957

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +1

Query: 274 YSGSRTSLPRQQYYWNDNTLKVRNKSS*EINNIT*NFKVKINE*AKLVNKK 426
           YS  +    ++Q +   +   +R K+S  + N+T NF + +++ +K V+ +
Sbjct: 273 YSRVKVRATKRQTHQKHDASPIRGKNSTYLENLTNNFSITLDKLSKFVDNE 323


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,600,440
Number of Sequences: 59808
Number of extensions: 240395
Number of successful extensions: 445
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)