Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1027
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    31   0.51 
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    31   0.51 
AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine re...    29   2.7  
Z81041-1|CAB02786.2|  362|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U58751-8|AAB00659.2|  635|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -2

Query: 461 FYLLHSHYSVYFFLFTSLAYSFIFTLKFHVILLIS*DDLFLTF 333
           +Y+ HSH   YFFL T++  S I+T+    + +I+  + FL F
Sbjct: 163 YYVYHSHGD-YFFLDTTIKRSLIYTILAPTLSVITAMNSFLNF 204


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -2

Query: 461 FYLLHSHYSVYFFLFTSLAYSFIFTLKFHVILLIS*DDLFLTF 333
           +Y+ HSH   YFFL T++  S I+T+    + +I+  + FL F
Sbjct: 163 YYVYHSHGD-YFFLDTTIKRSLIYTILAPTLSVITAMNSFLNF 204


>AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein78 protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/20 (55%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
 Frame = -3

Query: 460 FIYYTV-IIVCIFFCSRVWL 404
           F+YYTV +I+C+FF S ++L
Sbjct: 150 FVYYTVRVIICVFFSSILFL 169


>Z81041-1|CAB02786.2|  362|Caenorhabditis elegans Hypothetical
           protein C27A7.2 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/44 (22%), Positives = 27/44 (61%)
 Frame = +1

Query: 58  KKPLKPSTTT*VAAIHKLYYANFNRKLHK*KNISILPSYCQVII 189
           ++P++      +  + K +++ FN  +HK +++ IL ++ Q++I
Sbjct: 310 QRPVQKHGNNGIKNLWKFHFSEFNETIHK-EDVKILVNFFQILI 352


>U58751-8|AAB00659.2|  635|Caenorhabditis elegans Hypothetical
           protein C07G1.2 protein.
          Length = 635

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 253 CTKRFNKYSGS--RTSLPRQQYYWNDNTLKVRNKSS*EINN 369
           C  R  +YSG+  RTS  +    WND T+  R +   EI N
Sbjct: 222 CIARDKEYSGTANRTSDGKMCLMWNDPTVLFRRERDLEILN 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,781,979
Number of Sequences: 27780
Number of extensions: 206052
Number of successful extensions: 444
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)