Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1025
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687...    32   0.37 
01_01_0596 + 4435643-4436664,4437241-4437766                           31   0.64 
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665...    30   1.5  
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845     29   2.6  
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443...    28   4.5  
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515...    28   6.0  
03_05_0834 - 28051067-28051381,28051675-28052120,28052330-280526...    27   7.9  

>11_06_0233 +
           21565233-21566053,21566840-21567890,21568075-21568758,
           21568927-21569019,21571815-21571835
          Length = 889

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 345 ELSNCQTGLTTVYRVKADQCDRX---WVLDVGTYGYDNVTNVCPYTLNVFDLNTDQ 503
           EL + Q  L  V +V+ DQ D+    W  DV    YD   N+  + L++ D+  ++
Sbjct: 39  ELESIQAALEKVSKVQLDQLDKQIKIWARDVRELSYDIEDNIDTFMLHINDIEPNK 94


>01_01_0596 + 4435643-4436664,4437241-4437766
          Length = 515

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +3

Query: 288 DAPY--EPSPKLTPYPSF*GNELSNCQTGLTTVYRVKADQCDRX--WVLDVGTYGYDNVT 455
           DAP   +P   L  YP   G      ++    + RVK    D+   W+LD GT+ ++ V 
Sbjct: 205 DAPQVNDPYHNLIHYPHQHGKLNCLVESPAGDLMRVKRQSNDKFVVWILDKGTFSWEKVD 264

Query: 456 NVCPYTLNV 482
           N+  + L V
Sbjct: 265 NIGDFALFV 273


>07_01_1203 -
           11464142-11464324,11464422-11464484,11464685-11466515,
           11467240-11468036
          Length = 957

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +3

Query: 330 SF*GNELSNCQTGLTTVYRVKADQCD---RXWVLDVGTYGYDNVTNVCPYTLNVFDL 491
           +F  +EL + Q  +  + +V  DQ D   + W  DV    YD   NV  + L V DL
Sbjct: 27  TFLNSELESMQAEVDKISKVPLDQLDSQIKIWARDVRELSYDIEDNVDTFMLCVDDL 83


>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
          Length = 958

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = +3

Query: 345 ELSNCQTGLTTVYRVKADQCD---RXWVLDVGTYGYDNVTNVCPYTLNVFDLNTDQIIVN 515
           EL + Q  L  V +V  DQ D   + W  D+    YD   N+  + L V  L   +    
Sbjct: 48  ELKSIQAALEKVSKVPLDQLDEQTKIWAWDIRELSYDMEDNIDTFMLRVDGLEPAKKHNF 107

Query: 516 TCYDQK 533
           TC   K
Sbjct: 108 TCLVDK 113


>05_06_0043 +
           25143513-25143866,25144010-25144191,25144284-25144374,
           25144452-25144568,25144922-25144976,25145008-25145093,
           25145190-25145300,25145564-25145608,25145695-25145740,
           25146078-25146152,25146902-25146971,25147128-25147437,
           25147778-25147851,25147996-25148151,25148416-25148539
          Length = 631

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 144 LEAAGSQDWCSDTRERTARWYRKVEEQI 227
           +E   S+  CS+T E+  RWY + +E++
Sbjct: 246 IETIRSEFSCSETCEKLQRWYGETDEEV 273


>02_05_0624 -
           30451032-30451140,30451294-30451409,30451506-30451580,
           30452033-30452093,30452198-30452424
          Length = 195

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 115 VVDWNYPDQFSKQQALRTGALIPENALPVGIERWRNK 225
           +VD    DQ  K   +R    I E+  P G ++WRNK
Sbjct: 146 LVDELLSDQHLKNYRMRKVREIQESRTPGGSQKWRNK 182


>03_05_0834 -
           28051067-28051381,28051675-28052120,28052330-28052671,
           28053170-28053310,28053419-28053489,28053575-28053640,
           28053874-28054017,28054149-28054207,28054246-28054369,
           28054730-28054862,28055138-28055187,28055715-28055824,
           28057355-28057436,28057536-28057705,28057812-28058498,
           28058645-28058794,28058908-28059039,28059444-28059594,
           28060253-28060344,28062478-28062585
          Length = 1190

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 97  LGALSLLMLVRLAHRKLKTSLPFYLLKTS 11
           LG LS L ++RLA+ KL  S+P  L + +
Sbjct: 722 LGQLSKLQILRLAYNKLSGSIPGSLFQVA 750


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,229,032
Number of Sequences: 37544
Number of extensions: 325301
Number of successful extensions: 807
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)