Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1025
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical ...    32   0.25 
U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    32   0.33 
Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical pr...    29   1.8  

>AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical
           protein K08D12.6 protein.
          Length = 668

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 24/82 (29%), Positives = 34/82 (41%)
 Frame = +3

Query: 87  KAPRNILVERGRLELPGPVLEAAGSQDWCSDTRERTARWYRKVEEQIXRQRS*VALGIPA 266
           +AP +  VE+  + +P P   AA + D  S     T   YR        ++   A   PA
Sbjct: 371 EAPADAPVEQAPVAVPAPAPTAAPAPDCGSAAPAATDSGYRSKRNAYGDEQVTPA---PA 427

Query: 267 TLNYIPLDAPYEPSPKLTPYPS 332
                P DAP E +P   P P+
Sbjct: 428 AAAEAPADAPVEQAPVAVPAPA 449


>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +3

Query: 345 ELSNCQTGLTTVYRVKADQCDRXWVLDVGTYGYDNVTNVCPYTLNVFDLNTDQIIVNTC 521
           E S   T L   + V+  + D  W +  G YGY+N T+     +   D   DQ++  TC
Sbjct: 450 EKSWIPTHLKNTWNVRIYEGDDVWAVLWGVYGYNNTTSTT--CVQTHDSARDQVMWTTC 506


>Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical
           protein T28C6.7 protein.
          Length = 459

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = +3

Query: 138 PVLEAAGSQDWCSDTRERTARWYRKVEEQIXRQRS*VALGIPATLNYIPLDAPYEPSPKL 317
           P L A  S    +   ER AR        +  QR  +      T +  PLD P++PS KL
Sbjct: 90  PSLMAHSSVPLSNSKSERRAR--SSSPGHVIAQRKTMVSSSSGTFSPPPLDPPFDPSSKL 147

Query: 318 TPYPSF*G 341
           +  P   G
Sbjct: 148 SALPDIDG 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,899,653
Number of Sequences: 27780
Number of extensions: 272055
Number of successful extensions: 635
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)