Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1023
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    28   1.0  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   3.1  
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    26   5.4  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   7.1  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    25   7.1  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   9.4  

>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +3

Query: 216 HCILEKGQCTAEGRNLNLTS 275
           H ILE GQC  E RNL  TS
Sbjct: 425 HLILEYGQCVLESRNLWQTS 444


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 276 RKPSRPTALNAPKRKRVEPKR 338
           + P++P  L AP+RK   PK+
Sbjct: 277 QSPTKPVLLTAPRRKNKSPKK 297


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 297 ALNAPKRKRVEPKR*LVTSSTTKPNSGRS 383
           ALN  KR R   K  ++ SSTT+P +G++
Sbjct: 464 ALNFVKRVREITKMTMLASSTTRPATGQT 492


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 121  WPSLALNSTQTNTTLSIWTSSYLTVGSSFPTYIASS 228
            +PS + N+TQ   T SIW SS  T+ S+    I  +
Sbjct: 913  YPSYS-NTTQGMNTTSIWNSSNSTIVSNVTATITGN 947


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 177 GPDRQCRICLCTVQGERGPQPSR 109
           GP  +C  C+  ++GE+   PSR
Sbjct: 475 GPQSKCIKCVVDIKGEKKDTPSR 497


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 279  KPSRPTALNAPKRKRVEPKR*LVTSS-TTKPNSGRS*RPNTIPPTSSQRNMK 431
            KP++P  L AP+ K + P R   +SS    PN      P T PP  S  + +
Sbjct: 1005 KPTKPDHLVAPRVKPLLPPRSGSSSSGVPAPNLTPVNVPPTPPPRKSSASQR 1056


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,430
Number of Sequences: 5004
Number of extensions: 56002
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)