Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1023
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0348 - 16890842-16890925,16890942-16891019,16891079-168912...    29   3.2  
09_06_0270 + 21954652-21955245,21955827-21955964,21956050-219562...    29   4.2  
09_04_0644 + 19181335-19184424                                         29   4.2  
07_03_1296 + 25583195-25584385                                         29   4.2  
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726...    28   5.6  
02_01_0601 + 4465775-4465924,4466070-4466531,4466613-4467445,446...    28   5.6  
07_01_0717 - 5482084-5482482                                           27   9.7  
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389...    27   9.7  
02_05_1171 + 34672997-34673122,34673500-34673595,34674126-346742...    27   9.7  
01_06_0459 + 29538025-29538579,29539190-29539354,29539448-295395...    27   9.7  

>09_04_0348 -
           16890842-16890925,16890942-16891019,16891079-16891266,
           16891414-16891537
          Length = 157

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 344 GHLINH-EAEFWEELKAKYDPTNEFTKKYETELKRVTA*IPLKKANSSISCNEI 502
           G L  H EA F  E  A+YD  NEFT   E   + + A +  +  + ++  NE+
Sbjct: 99  GELCKHMEATFIPEFTARYDLCNEFTNGAEGFFEELMASVWHEGPHGAMQINEM 152


>09_06_0270 +
           21954652-21955245,21955827-21955964,21956050-21956295,
           21956407-21956520,21956633-21956815,21956926-21957143,
           21957210-21957246,21957865-21958219,21958284-21958337,
           21958513-21958529
          Length = 651

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 604 TSLLQNIYNTNYIFS*AL*KKNVC 533
           +S+  N+Y  NY+    L KKNVC
Sbjct: 508 SSMYSNVYRINYLLDMGLSKKNVC 531


>09_04_0644 + 19181335-19184424
          Length = 1029

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 582 IIPITYFRRHFEKKMCVELKIKSTNT*ISLHDIELLAFFKG 460
           II I  F     +K+C++LKIKS N    L + + + + KG
Sbjct: 439 IINIPEFGDKSAEKVCLDLKIKSQNDKEKLAEAKRMTYLKG 479


>07_03_1296 + 25583195-25584385
          Length = 396

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 367 GFVVDEVTNHLFGSTLLRFGAFSAVGLEGFLDVRFKFLPSAVHWPFSR 224
           G  ++EV     GS+++ FG    +G +  +D     L +  H PF R
Sbjct: 340 GININEVAKGTDGSSMMHFGGDEEIGFDLDVDATDAILGNLQHLPFLR 387


>04_01_0567 -
           7263744-7263922,7264020-7264259,7264919-7264982,
           7265088-7265393,7265652-7265866,7266195-7266489,
           7266596-7266655,7267091-7267717,7268510-7268596,
           7269292-7269612,7270051-7270224,7272806-7275022
          Length = 1594

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = -2

Query: 182 ELVQIDSVVFVCVLFRASEGHSRQGKQANNNGLHSEKLYYFCITRVVV*DPRPP 21
           +L  + +VVFV V  RA    SR+   AN NG H+E+        VV   P PP
Sbjct: 52  DLAFLLAVVFVAV--RARLSRSRREGIANGNGDHAEEEPLLAKPSVVAAVPPPP 103


>02_01_0601 +
           4465775-4465924,4466070-4466531,4466613-4467445,
           4467528-4467597,4467613-4467698,4467865-4468036,
           4468481-4468519,4469410-4469430
          Length = 610

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +3

Query: 192 RRLLIPYVHCILEKGQCTAEGRNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSSTTKPN 371
           +R+ +P     L K   T  G+ L L + + S+    +APKR+  +    L  +  TK +
Sbjct: 28  QRMSMPRFQTSLNKELATGRGQGLGLVAEQASQSKVESAPKRREDDI---LTKALGTKEH 84

Query: 372 SGRS 383
            GR+
Sbjct: 85  PGRT 88


>07_01_0717 - 5482084-5482482
          Length = 132

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 171 LDQLISNRRLLIPYVHCILEKGQCTAEGRNLNLTSRKPSRPTAL 302
           LDQ IS      P+   +L + +C+  G  +++T+  P +P  L
Sbjct: 7   LDQSISRHPRTRPHDRLLLPRKECSGSGGVVHVTAVVPHQPATL 50


>07_01_0524 +
           3892340-3894625,3894995-3895109,3895204-3895298,
           3895929-3896167,3896524-3896610,3896967-3897066,
           3897908-3898115,3898224-3899422
          Length = 1442

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 227 RKGPMYRRRQELKSHIKEALETN 295
           RKGP Y  +Q+L+  IK+ L  N
Sbjct: 456 RKGPRYTMKQKLRGQIKDILLNN 478


>02_05_1171 +
           34672997-34673122,34673500-34673595,34674126-34674229,
           34674303-34674502,34674643-34674765,34674910-34674998,
           34675579-34675642,34675906-34676049,34676173-34676270,
           34676479-34676724,34676826-34676909,34677011-34677022
          Length = 461

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/74 (27%), Positives = 30/74 (40%)
 Frame = +2

Query: 224 PRKGPMYRRRQELKSHIKEALETNCAKCTKAQKGGTEKMIGHLINHEAEFWEELKAKYDP 403
           PR G     R+    H +E +        + Q+GGT        N + E WE L   YDP
Sbjct: 41  PRPGLTLSPRRWKLLHNEEGVLDIAGMIKRVQRGGTHP------NIKGEVWEFLLGCYDP 94

Query: 404 TNEFTKKYETELKR 445
            +   +K +   +R
Sbjct: 95  KSNTEQKSQLRQQR 108


>01_06_0459 +
           29538025-29538579,29539190-29539354,29539448-29539585,
           29539685-29539836,29539949-29540057,29540281-29540379,
           29541051-29541116,29541208-29541315,29541428-29541553
          Length = 505

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 186 SNRRLLIPYVHCILEKGQCT-AEGRNLNLTSRKPSRP 293
           S RRL +PY+H +L  G  T +  R L   S  P  P
Sbjct: 9   SKRRLALPYLHRLLHSGPATPSPNRFLRHASPVPRDP 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,936,311
Number of Sequences: 37544
Number of extensions: 361769
Number of successful extensions: 977
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)