Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1023
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 33   0.15 
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)                 32   0.35 
SB_5550| Best HMM Match : BofA (HMM E-Value=3.3)                       31   0.81 
SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35)                   30   1.4  
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)                  30   1.4  
SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27)          28   7.5  
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_34783| Best HMM Match : Gam (HMM E-Value=0.24)                      27   9.9  
SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_19608| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_2648| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 270 TSRKPSRPTALNAPKR--KRVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSSQ 419
           TSRK S+ T+LNA ++  ++   KR L TS  T P + R     T P TS +
Sbjct: 320 TSRKTSQKTSLNASRKTSRKTSLKRSLKTSPKTSPKTMRMKSLKTSPKTSPE 371



 Score = 31.1 bits (67), Expect = 0.81
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 243 TAEGRNLNLTSRKPSRPTALNAPKRK--RVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSS 416
           T++  +LN  SRK SR T+L    +   +  PK   + S  T P +     P T P TSS
Sbjct: 324 TSQKTSLN-ASRKTSRKTSLKRSLKTSPKTSPKTMRMKSLKTSPKTSPEISPRTSPKTSS 382

Query: 417 QRNMK 431
           + + K
Sbjct: 383 KTSPK 387


>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
          Length = 360

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 23/63 (36%), Positives = 32/63 (50%)
 Frame = +3

Query: 243 TAEGRNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSSQR 422
           T++  +LN  SRK SR T+L   +  +  PK  L TS  T     R+  P   P TSS+ 
Sbjct: 104 TSQKTSLN-ASRKTSRKTSLK--RSLKTSPKTSLKTSRKTDRKKSRNTSPKRSPKTSSKS 160

Query: 423 NMK 431
           + K
Sbjct: 161 SPK 163



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 270 TSRKPSRPTALNAPKR--KRVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSSQRNMKLNSN 443
           TSRK S+ T+LNA ++  ++   KR L TS  T   + R         TS +R+ K +S 
Sbjct: 100 TSRKTSQKTSLNASRKTSRKTSLKRSLKTSPKTSLKTSRKTDRKKSRNTSPKRSPKTSSK 159

Query: 444 A 446
           +
Sbjct: 160 S 160



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/72 (25%), Positives = 37/72 (51%)
 Frame = +3

Query: 225 LEKGQCTAEGRNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGRS*RPNTIP 404
           L+  + T   ++ N + ++  + ++ ++PK     PK  L TSS T P +  +    T  
Sbjct: 134 LKTSRKTDRKKSRNTSPKRSPKTSSKSSPK---TSPKTSLKTSSKTSPKTSLNTSRKTSR 190

Query: 405 PTSSQRNMKLNS 440
            TS +R++K ++
Sbjct: 191 KTSLKRSLKTST 202


>SB_5550| Best HMM Match : BofA (HMM E-Value=3.3)
          Length = 203

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -3

Query: 445 AFEFSFIFLCELVGGIVFGLQLLPEFGFVVDEVTNHLFG 329
           AF   F  +  LV G+VFGL   P FG V   V   +FG
Sbjct: 90  AFRLVFGLVLRLVFGLVFGLVFWPVFGLVFGLVFGLVFG 128


>SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +2

Query: 296 CAKC---TKAQKGGTEKMIGHLINHEAEFWEELKAK 394
           C KC       +G T  +I HL NH  + +EE   K
Sbjct: 51  CKKCFAVVATSRGNTSNLIAHLRNHHPDLYEEFNTK 86


>SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35)
          Length = 963

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = +2

Query: 125 PRSP*TVHRQIRHCRSGPAHI*PSAPHSLRTLHPRKGPMYRRRQELKSHIKEALETNCAK 304
           P SP  +H +  HC +    + P    S  T     GP  R+ Q+      EA+E   A+
Sbjct: 235 PPSP--LHSETSHCATSKGEVEPVQRCSPETAKTALGPKTRKHQDWFDENNEAIENLLAR 292

Query: 305 CTKA 316
             KA
Sbjct: 293 KNKA 296


>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
          Length = 240

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 243 TAEGRNLNLTSRKPSRPTALNAPKRK--RVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSS 416
           T++  +LN  SRK SR T+L    +   +  PK   + S  T P +     P T P TSS
Sbjct: 76  TSQKTSLN-ASRKTSRRTSLKRSLKTSPKTSPKTMRMKSLKTSPKTSPEIGPRTSPKTSS 134

Query: 417 QRNMK 431
           + + K
Sbjct: 135 KTSPK 139



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 270 TSRKPSRPTALN-APKRK-RVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSSQRNMK 431
           TS K  R  +L  +PK    + P+    TSS T P +     P T P TSS+ ++K
Sbjct: 104 TSPKTMRMKSLKTSPKTSPEIGPRTSPKTSSKTSPKTSPKSSPKTSPKTSSKTSLK 159


>SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27)
          Length = 611

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
 Frame = +2

Query: 389 AKYDP--TNEFTKKYETELKRVTA*IPLKKANSSISCNEIYVLVDLIFNS--THIFFSKC 556
           A Y P  + E  K+   E K V+  +P  +AN +  C  +Y L+D +  S  T I     
Sbjct: 372 AWYTPEVSEEKRKRRRLERKWVSTGLPTDRANYAYQCGVVYNLIDSLKTSYYTSIIQEHS 431

Query: 557 L-RKYVIGIINILQKACDVSCY 619
           L +K +   IN L +   V  Y
Sbjct: 432 LDQKVLFKTINKLLEKKSVQYY 453


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 240 CTAEGRNLNLTSRKPSRPTALNAPKRKRVEPK 335
           C    R     S++P+ PT    PKR RV P+
Sbjct: 629 CKTTARRTTKPSKEPAIPTTKPIPKRDRVTPE 660



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 240  CTAEGRNLNLTSRKPSRPTALNAPKRKRVEPK 335
            C    R     S++P+ PT    PKR RV P+
Sbjct: 994  CKTTARRTTKPSKEPAIPTTKPIPKRDRVTPE 1025


>SB_34783| Best HMM Match : Gam (HMM E-Value=0.24)
          Length = 347

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 239 MYRRRQELKSHIKEALETNCAKCTKAQKGGT 331
           M   ++ L+   +EA  T C KC+ A++G +
Sbjct: 150 MREEKRYLRDMSREAATTGCVKCSSARRGSS 180


>SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1191

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +2

Query: 389  AKYDPTNEFTKKYETELKRVTA*IPLKKANSSISCNEIYVLVDLIFNSTHIFFSKCLRKY 568
            AK+ P +   +K  T LK+ T+   L+  +S I  + +  L DLI ++  I   +    +
Sbjct: 823  AKFPPVSGIIQKILTILKQNTSLRCLRLHSSGILPDALLALADLIVHNNAIEILQLHIPF 882

Query: 569  VIGIINILQ 595
             I ++N L+
Sbjct: 883  NIDVVNALK 891


>SB_19608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = +3

Query: 138 EQYTDKYDTVDLDQLISNRRLLIPYVHCILEKGQCTAEGRNLNLTSRK 281
           E YTD YD V +DQ I  R  L        E      E +N+ LT  K
Sbjct: 268 EAYTDSYDDVIIDQPILTREDLEKESRAREESRHLLKELKNVLLTKSK 315


>SB_2648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = +3

Query: 138 EQYTDKYDTVDLDQLISNRRLLIPYVHCILEKGQCTAEGRNLNLTSRK 281
           E YTD YD V +DQ I  R  L        E      E +N+ LT  K
Sbjct: 141 EAYTDSYDDVIIDQPILTREDLEKESRAREESRHLLKELKNVLLTKSK 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,695,020
Number of Sequences: 59808
Number of extensions: 419249
Number of successful extensions: 1155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)