Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1023
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50027-2|CAA90335.1|  188|Caenorhabditis elegans Hypothetical pr...    31   0.53 
AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z77136-9|CAI91180.1|  474|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z77136-7|CAD54177.1|  472|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z77136-6|CAB00883.1|  488|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    27   8.7  

>Z50027-2|CAA90335.1|  188|Caenorhabditis elegans Hypothetical
           protein C39B10.3 protein.
          Length = 188

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +2

Query: 332 EKMIGHLINHEAEFWEELKAKYDPTNEFTKKYETELKRVTA 454
           E+M+  L++   ++ EEL+ K D   + TK+YE EL++V A
Sbjct: 81  EEMLTFLVDASKKYDEELEEKRDENKKATKEYE-ELEKVAA 120


>AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical
           protein Y106G6D.3 protein.
          Length = 555

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +3

Query: 228 EKGQCTAEGRNLNLTSRKPSRPTALNAPKRKRVE---PKR*LVTSSTTKP 368
           +KGQC++E R      R  S+  +L APK  +++    K   V+S+TT P
Sbjct: 365 QKGQCSSEARYAQNVRRSASQ-KSLRAPKENKLKDGSAKTPKVSSTTTPP 413


>Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical
           protein F17B5.1a protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +2

Query: 245 RRRQELKSHIKEALETNCAKCTK-AQKGGTEKMIGHLINHEAEFWEELKAKYDPTNEFTK 421
           ++R+E ++ IKE  E       + A+K   E+        E + +EE K K +   E  K
Sbjct: 528 KQREEEEARIKEEEEKQRKILEEEARKKQEEEEARLKAEEELKIYEEEKRKKELEEERKK 587

Query: 422 KYETELKRVTA*IPLKKA 475
           K E E+KR       KKA
Sbjct: 588 KEELEIKRKAEEEKKKKA 605


>Z77136-9|CAI91180.1|  474|Caenorhabditis elegans Hypothetical
           protein ZC376.7c protein.
          Length = 474

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +3

Query: 342 LVTSSTTKPNSGRS*RPNTIPPTSS 416
           L+TSST+ P+SG S     IPP SS
Sbjct: 251 LMTSSTSSPDSGISLYDPMIPPPSS 275


>Z77136-7|CAD54177.1|  472|Caenorhabditis elegans Hypothetical
           protein ZC376.7b protein.
          Length = 472

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +3

Query: 342 LVTSSTTKPNSGRS*RPNTIPPTSS 416
           L+TSST+ P+SG S     IPP SS
Sbjct: 249 LMTSSTSSPDSGISLYDPMIPPPSS 273


>Z77136-6|CAB00883.1|  488|Caenorhabditis elegans Hypothetical
           protein ZC376.7a protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +3

Query: 342 LVTSSTTKPNSGRS*RPNTIPPTSS 416
           L+TSST+ P+SG S     IPP SS
Sbjct: 265 LMTSSTSSPDSGISLYDPMIPPPSS 289


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
           protein Y47G6A.17 protein.
          Length = 1736

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = +2

Query: 251 RQELKSHIKEALETNCAKCTKAQKGGTEKMIGHLINHEAEFWEELKAKYDPTNEFTKKY 427
           RQE+  + K  +E       +A++   +KMI  +++ +++FW +  A     NE  KK+
Sbjct: 800 RQEMTVYAKSPVEAEL----EARENMLKKMID-VVSDQSDFWNQESAMLQAENEELKKF 853


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,846,594
Number of Sequences: 27780
Number of extensions: 323548
Number of successful extensions: 962
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)