Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1023
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01580.1 68416.m00088 pentatricopeptide (PPR) repeat-containi...    31   0.50 
At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal hydrolase-r...    30   1.5  
At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)...    29   2.0  
At3g03140.1 68416.m00310 expressed protein                             29   3.5  
At2g04040.1 68415.m00385 MATE efflux family protein contains Pfa...    27   8.1  

>At3g01580.1 68416.m00088 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 641

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 218 LHPRKGPMYRRRQELKSHIKEALETNC 298
           LHP K P+Y   +EL  H+KE LE NC
Sbjct: 606 LHPEKEPVYGLLKELDLHMKEDLE-NC 631


>At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF04780:
           Protein of unknown function (DUF629), PF04781: Protein
           of unknown function (DUF627)
          Length = 1106

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 276 RKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSSQRNMKLNSNALQ 452
           +K  +P+ + + K+K    KR   + S+     G    P T  PT  + +M+L     Q
Sbjct: 722 KKNPKPSPIQSKKKKNTSKKRNSTSMSSPLSKPGEHLEPETTSPTVEEDSMELGDTVNQ 780


>At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)
           family protein similar to cytosolic leucyl-tRNA
           synthetase [Candida albicans] GI:9858190; contains Pfam
           profile PF00133: tRNA synthetases class I (I, L, M and
           V)
          Length = 1084

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 582 IIPITYFRRHFEKKMCVELKIKSTNT*ISLHDIELLAFFKG 460
           II I  F     +K+C++LKIKS N    L + + L + KG
Sbjct: 434 IINIPEFGDKAAEKVCLDLKIKSQNDKEKLAEAKRLTYLKG 474


>At3g03140.1 68416.m00310 expressed protein
          Length = 769

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 183 ISNRRLLI--PYVHCILEKGQCTAEGRNLNLTSRKPSRPTALNAPKRKRVE 329
           +SNRR+L   P V CI  K       R L   +R PS+PTA    +R+RV+
Sbjct: 722 LSNRRVLPGPPTVACIPVK---LVYSRLLEKINRPPSKPTAKAFNERRRVQ 769


>At2g04040.1 68415.m00385 MATE efflux family protein contains Pfam
           profile: PF01554 uncharacterized membrane protein family
          Length = 476

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 438 SSVSYFFVNSLVGSYLAFSSSQN 370
           ++VSY+ V + VG YLAFS   N
Sbjct: 407 NTVSYYLVGAPVGIYLAFSRELN 429


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,778,638
Number of Sequences: 28952
Number of extensions: 292669
Number of successful extensions: 839
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)