Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1022
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   1.1  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         26   4.5  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    25   5.9  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    25   5.9  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.8  

>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +1

Query: 274 KAILVKGVVTSDIVGRPTEIRFFYKQAENENYVVYFPNFNLTMRDP 411
           K+ L++ +V   + G PT +R  Y + + +      P+ +  ++DP
Sbjct: 473 KSTLMRAIVNGQVEGFPTHLRTVYVEHDIDESEADTPSVDFILQDP 518


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -2

Query: 384 REIHNIVFVFGLFVEKSYFSRTSHNIGGYYTLYKDSFDSVNFTRSTLTYVKASCLPHQPV 205
           R++ ++V+ + L  EK Y   +S      +TL       + FT+ T+ Y+  +CL   P 
Sbjct: 295 RKLDSLVYQYAL--EKGYRQPSSSRNSWIFTLL------LTFTQLTIFYLSLNCLIENPY 346

Query: 204 TELSRIF 184
             L   F
Sbjct: 347 RMLRNTF 353


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 19/39 (48%), Positives = 22/39 (56%)
 Frame = +1

Query: 193 TQFGYGLVW*ARSFYVCECRSGKVYRVKAILVKGVVTSD 309
           T+FG  LV  AR+ Y     +GK     A L KGVVTSD
Sbjct: 41  TEFGVLLVR-ARNTYFAT--AGKCSHYGAPLAKGVVTSD 76


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 453 CPSKVCNFGHSQFHGQRLSKFEVMGCEEPSTEPLLGYDY 569
           CP  VC   H QFH   L +   +G   P T  L   DY
Sbjct: 50  CPVTVCGDIHGQFHD--LMELFNIGGPSPDTNYLFMGDY 86


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 475 LGIV-SFMDNACPNLK*WDVKNQAQNPYWVTT 567
           LGIV + M N   NLK W +  +A   +W+ T
Sbjct: 556 LGIVENIMQNNGTNLKNWRILLKASYKFWLRT 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,929
Number of Sequences: 5004
Number of extensions: 53233
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)