Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1022
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1342 - 25891761-25892102,25892588-25893135,25893342-258950...    28   6.0  
09_04_0709 + 19655916-19656076,19657643-19657680,19658168-196582...    27   8.0  
01_01_0262 + 2130487-2130574,2130674-2131744,2131847-2131991,213...    27   8.0  

>07_03_1342 -
           25891761-25892102,25892588-25893135,25893342-25895012,
           25895818-25896745
          Length = 1162

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 65  PITCMREPECKVIKPLGLASGRIPDSAINATSERPNYEAKNIRLNSVTGWCG 220
           PITC R     ++ P GL +G   D+ + A S+  +     +R+  + G  G
Sbjct: 561 PITCFRPGNDLLVFPDGLPAGNYDDTGV-AQSQSSHGHKAGVRVALIVGCIG 611


>09_04_0709 +
           19655916-19656076,19657643-19657680,19658168-19658259,
           19658414-19658560
          Length = 145

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 71  TCMREPECKVIKPLGLASGRIPDSAINA-TSERPNYEAKNIRLNSVTGWCGKQEAFTY 241
           T M  P  ++++ L   + R+PD  I+  T+  P Y A  +      GWCG+     Y
Sbjct: 23  TGMTRPLVEILRDL---NKRVPDKIIDPDTNTVPWYHANRMLSFYAPGWCGEVRNVIY 77


>01_01_0262 +
           2130487-2130574,2130674-2131744,2131847-2131991,
           2132873-2132944,2133330-2133398,2134173-2134241,
           2134322-2134403
          Length = 531

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 68  ITCMREPECKVIKPLGLASGRIPDSAINATSERPNYEAKNIRLNSVTG 211
           +TC+R+ +  VI  L LAS  +     +  S   +  + N+  NS+TG
Sbjct: 421 VTCLRKDKGLVITQLDLASQGLKGYITDEISHLTDLVSLNLSYNSLTG 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,249,936
Number of Sequences: 37544
Number of extensions: 308962
Number of successful extensions: 759
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)