Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1022
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    65   4e-11
AC084197-25|AAK68591.1|  609|Caenorhabditis elegans Hypothetical...    30   1.0  
U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z77660-7|CAB01174.1|  318|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF016446-13|AAC24172.1|  349|Caenorhabditis elegans Seven tm rec...    28   5.4  
U52003-2|AAY43981.1|  554|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF022972-12|AAC48232.1|  363|Caenorhabditis elegans Seven tm rec...    27   9.5  
AC006742-5|AAF60496.1|  239|Caenorhabditis elegans Hypothetical ...    27   9.5  
AC006742-4|AAF60495.1|  239|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
            protein F47C12.1 protein.
          Length = 1827

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
 Frame = +2

Query: 2    EQGSEVLFGCSRPGYILINPRPITCMREPECKVIKPLGLASGRIPDSAI--NATSERPNY 175
            E+G+   F C RPG++      + C     C + + +G+ SG +PD A   N+ S    Y
Sbjct: 910  EEGAIAKFSCKRPGFVPFPSDTLQCTLGASCVLSEDVGIVSGFVPDGAFADNSDSTNLGY 969

Query: 176  EAKNIRLNSVTGWCGKQEAFTYVSVDL 256
            E  + R+ S +GWCG +E F ++SVDL
Sbjct: 970  EPHHARMGS-SGWCGAKEDFIFLSVDL 995



 Score = 34.3 bits (75), Expect = 0.063
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +1

Query: 259  KVYRVKAILVKGVVTSD-IVGRPTEIRFFYKQAENENYVVYFPNFNLTMRDPGNYGELAM 435
            ++Y +  + + GV  S  + G  T+ + FYK      +  Y   F       GN+  +  
Sbjct: 997  RIYTLTTLRIAGVAGSGHLKGHVTKFQLFYKTENQHTHKPYPVEFE---SPAGNHNAMHH 1053

Query: 436  ITLPKFVQARFVILGIVSFMDNAC 507
              L   ++AR+++ G+  +  N C
Sbjct: 1054 FDLKFPLRARYILFGVTEYEGNPC 1077



 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 474  FGHSQFHGQRLSKFEVMGCEEPST 545
            FG +++ G    KF++MGC  P++
Sbjct: 1067 FGVTEYEGNPCMKFDLMGCVAPAS 1090


>AC084197-25|AAK68591.1|  609|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.19 protein.
          Length = 609

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 345 QTSRKRKLCCVFPEFQFNHEGSRKLWRTSNDYIAKIC 455
           +T RKR+LCCV  E +   E  R+   T N  + +IC
Sbjct: 519 KTKRKRRLCCVSKENEEMEELDRETRVTFNQNMDQIC 555


>U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical
           protein M02B7.5 protein.
          Length = 640

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 390 EIREIHNIVFVFGLFVEKSYFSRTSHNIGGYYTLYKDSF 274
           E  +I  I+  F L   KS   RTSH  GG+ T++  SF
Sbjct: 320 EAEKIDRIIQAFALHYSKSNPKRTSHYRGGWDTIHLLSF 358


>Z77660-7|CAB01174.1|  318|Caenorhabditis elegans Hypothetical
           protein F38H4.9 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +3

Query: 453 CPSKVCNFGHSQFHGQRLSKFEVMGCEEPSTEPLLGYDY 569
           CP  VC   H QFH   L +   MG + P T  L   DY
Sbjct: 59  CPVTVCGDVHGQFHD--LMELFKMGGKSPDTNYLFMGDY 95


>AF016446-13|AAC24172.1|  349|Caenorhabditis elegans Seven tm
           receptor protein 211 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +1

Query: 199 FGYGLVW*ARSFYVCECRSGKVYR----VKAILVKGVVTSDIVGRPTEIRFFYKQAENEN 366
           F  GL+W    +++C  R+         V+A L  G+  SDIV       +FY++ E   
Sbjct: 142 FSVGLIWALVGYFLCYPRASTTEHLNDNVRARL--GLNISDIVYFAP---YFYEKNEMGQ 196

Query: 367 YVVYFPNFNLTMRD 408
            V+Y+P+F   M D
Sbjct: 197 NVIYWPSFIGIMLD 210


>U52003-2|AAY43981.1|  554|Caenorhabditis elegans Hypothetical
           protein ZK381.8 protein.
          Length = 554

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 351 LFVEKSYFSRTSHNIGGYYTLYKDSFDSVNFTRSTLTY 238
           +F+  +Y+  TS ++G     +    DS+NF     TY
Sbjct: 106 VFITSAYYYPTSKSLGSNAVAFTMVVDSINFNVENATY 143


>AF022972-12|AAC48232.1|  363|Caenorhabditis elegans Seven tm
           receptor protein 204 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 205 YGLVW*ARSFYVCECR-SGKVYRVKAILVKGVVTSDIVGRPTEIRFFYKQAENENYVVYF 381
           +GL+W   +++ C  R S  +Y    +  K  ++ D V       +FY+  +N N  +Y+
Sbjct: 143 FGLIWSCLTYWPCAKRESTDIYVKDNLYEKFNLSIDDVEYIAP--YFYELDKNGNLEIYW 200

Query: 382 PNF 390
           P+F
Sbjct: 201 PSF 203


>AC006742-5|AAF60496.1|  239|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.7 protein.
          Length = 239

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 331 IRFFYKQAENENYVVYFPNFNLTMRDPGNYGELAMITLP 447
           I FF   A+N NY  +  N+   +RD G   +L  ++LP
Sbjct: 12  IAFFKNCAKNGNYTPFLSNYRGLIRDIGQ--QLEKVSLP 48


>AC006742-4|AAF60495.1|  239|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.3 protein.
          Length = 239

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 331 IRFFYKQAENENYVVYFPNFNLTMRDPGNYGELAMITLP 447
           I FF   A+N NY  +  N+   +RD G   +L  ++LP
Sbjct: 12  IAFFKNCAKNGNYTPFLSNYRGLIRDIGQ--QLEKVSLP 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,665,346
Number of Sequences: 27780
Number of extensions: 291497
Number of successful extensions: 688
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)