Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1022
         (571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    30   1.2  
At5g48450.1 68418.m05991 multi-copper oxidase type I family prot...    28   5.0  
At4g15215.1 68417.m02332 ABC transporter family protein similar ...    28   5.0  
At1g53730.1 68414.m06114 leucine-rich repeat transmembrane prote...    27   8.8  

>At1g59910.1 68414.m06749 formin homology 2 domain-containing protein
            / FH2 domain-containing protein contains formin homology
            2 domain, Pfam:PF02128
          Length = 929

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = +1

Query: 325  TEIRFFYKQAENENYVVYFPNFNLT--MRDPGNYGELAMITLPKFVQARFVILGIVSFMD 498
            T++R F++ AE E  V+      +   ++   NY +   +      Q   +I   +  +D
Sbjct: 800  TKLRSFFESAEEELKVITEEQLRIMELVKKTTNYYQAGALKERNLFQLFVIIRDFLGMVD 859

Query: 499  NACPNLK*WDVKNQAQNP 552
            NAC  +     K Q Q P
Sbjct: 860  NACSEIARNQRKQQQQRP 877


>At5g48450.1 68418.m05991 multi-copper oxidase type I family protein
           contains Pfam profile: PF00394 Multicopper oxidase; also
           similar to l-ascorbate oxidase and pollen-specific
           protein
          Length = 550

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +2

Query: 44  YILINPRPITCMREPECKVIK---PLGLASGRIPDSAINATSERPNYEAKNIRLNSVTG 211
           YI+ +PR  T ++     V++     G ASG +PD  I   +     +A+++RLN  +G
Sbjct: 282 YIVASPRFATSIKASGVAVLRYSNSQGPASGPLPDPPIELDTFFSMNQARSLRLNLSSG 340


>At4g15215.1 68417.m02332 ABC transporter family protein similar to
           PDR5-like ABC transporter [Spirodela polyrhiza]
           GI:1514643; contains Pfam profile PF00005: ABC
           transporter
          Length = 1390

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +2

Query: 212 WCGKQEAFTYVSVD--LVKFTESKL 280
           WC + + ++Y+SVD  + KF ES L
Sbjct: 425 WCHRSKPYSYISVDSFIKKFNESNL 449


>At1g53730.1 68414.m06114 leucine-rich repeat transmembrane protein
           kinase, putative similar to GI:3360289 from [Zea mays]
           (Plant Mol. Biol. 37 (5), 749-761 (1998))
          Length = 719

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 441 IAKICPSKVCNFGHSQFHGQ 500
           +++I P K  N GH+QF GQ
Sbjct: 138 LSQITPLKYLNLGHNQFKGQ 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,895,055
Number of Sequences: 28952
Number of extensions: 271098
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)