Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1021
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   8.4  
DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory pro...    21   8.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.4  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   8.4  
AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical pro...    21   8.4  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 476 NFNAFQTVSSKVNLKCW 426
           N   F   S +VNL CW
Sbjct: 362 NNELFHLGSDEVNLTCW 378


>DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory
           protein 2 protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 543 VLIASAPYKSE*VYPNHHDN 484
           VLIA+A   +  VYP  +DN
Sbjct: 8   VLIATAVAATYDVYPTKYDN 27


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 53  SSILTCNLPSF 21
           +++L CN+PSF
Sbjct: 139 TAVLKCNIPSF 149


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 198 NNVFSDTCNWYFTW 157
           N V S+ CN  F+W
Sbjct: 213 NGVTSEKCNLTFSW 226


>AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical
           protein protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 543 VLIASAPYKSE*VYPNHHDN 484
           VLIA+A   +  VYP  +DN
Sbjct: 8   VLIATAVAATYDVYPTKYDN 27


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,975
Number of Sequences: 336
Number of extensions: 3290
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)