Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1021
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   2.2  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    27   2.2  
SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of RNA-me...    26   3.9  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   3.9  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   6.8  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   9.0  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    25   9.0  

>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 403 SNSPDFSIVTYCKSERSDMTLNLIPAQLVS*HLIPTSLS 287
           SN+P+  ++ Y      D++ +L+P +L +    PTS+S
Sbjct: 254 SNTPESLLIDYQSKIPEDLSSSLLPLELNTLQSTPTSVS 292


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 403 IIPRTSLSQHFKLTLLDTVWK 465
           ++P T L +H +L LLD  W+
Sbjct: 392 LVPATELEEHMRLKLLDPRWQ 412


>SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of
           RNA-mediated gene silencing |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 336 RFSVISERSDLQYVTIEKSGLLDYSSNLFKPALQIDFARH 455
           +++ +SE + +Q  TI+K+   DY   +F P  ++ FA H
Sbjct: 41  KWTNLSETTFVQKPTIDKA---DYRLRIFTPECELSFAGH 77


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 211  ECTEFDNDITKCKAEPDTILKIHVRMIMMWESDATKQVGR-ESDLASYQNALIYNMLQLR 387
            EC + +N ITK K E +   K         +   TK  G+   DL  Y  AL   ++QL 
Sbjct: 1064 ECKQLENSITKDKEELNMEFKDADERFRR-QLIKTKTTGKANEDLGKYAKALDVAIMQLH 1122

Query: 388  NL 393
            ++
Sbjct: 1123 SM 1124


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 328 RESDLASYQNALIYNMLQLRNLDC*IIPRTS 420
           ++++ A Y+N +   + QLR +D  IIP+TS
Sbjct: 298 QKTNPAVYRNKVRLCLPQLRQIDATIIPKTS 328


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 533 HRLHTSQNKYTQTIMIIICNFNAFQTVSSKVNLKC 429
           H +    +KY Q +  ++  +N+ + VSS +N  C
Sbjct: 665 HMVSLRGSKYGQKVAYLVEKWNSQKQVSSVINYNC 699


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 25/105 (23%), Positives = 41/105 (39%)
 Frame = +1

Query: 82  WNIINAALVCNQLGLALNPDDWFLEPSEIPVAGITEDIILSNVECTEFDNDITKCKAEPD 261
           W   N  L C  L +A+N  +   E ++I V G      + N +     ++ T    +  
Sbjct: 288 WAFNNTGLQCEALAIAINQINE--ECNDINVLGT----FIGNHDLPRISHNNT----DQA 337

Query: 262 TILKIHVRMIMMWESDATKQVGRESDLASYQNALIYNMLQLRNLD 396
            I+   +  +MMW+       G E +  SY +      L L N D
Sbjct: 338 RIMNA-ITFVMMWDGIPIIYYGTEQNFNSYHDPFNREALWLSNFD 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,879
Number of Sequences: 5004
Number of extensions: 54234
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)