Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1021
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1553 - 34363848-34366058,34369087-34370451                       33   0.25 
09_04_0489 - 18031187-18031579,18032033-18034030,18034102-180342...    30   1.3  
01_06_0714 + 31413195-31413221,31414238-31414786                       29   3.0  
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510...    29   4.0  
05_01_0078 - 523366-525196,525622-525675,527135-529341                 28   7.0  
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     27   9.2  
02_05_0787 - 31742685-31742702,31742703-31742744,31742993-317430...    27   9.2  
02_01_0171 - 1179095-1179388,1179668-1179801,1180036-1180900,118...    27   9.2  

>04_04_1553 - 34363848-34366058,34369087-34370451
          Length = 1191

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
 Frame = +3

Query: 315 ETSWAGIRFSVISERSDLQYVTIEKSGLLDYSSNLFKPALQIDFAR-HSLESVKIANNYH 491
           E  W  ++ + +S   D     + K  L+D S N+F   +   F +  SLES+ +A+N  
Sbjct: 688 ELRWLSLQENQLSGSLDKALGNLSKLTLIDLSYNMFNGNIPDVFGKLRSLESLNLASNQL 747

Query: 492 DG-LGILILTCMEPMRSIPSGIQNSVT 569
           +G L + + +C  PM  + S   NS++
Sbjct: 748 NGTLPLSLSSC--PMLRVVSLRNNSLS 772


>09_04_0489 -
           18031187-18031579,18032033-18034030,18034102-18034234,
           18035360-18036108
          Length = 1090

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +1

Query: 184 TEDIILSNVECTEFDNDITKCKAEPDTI 267
           T+D++LSN +CT+ DN ITK  A   TI
Sbjct: 536 TKDLVLSNADCTQNDN-ITKDLAPNPTI 562


>01_06_0714 + 31413195-31413221,31414238-31414786
          Length = 191

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 82  WNIINAALVCNQLGLALNPDDWFLE 156
           WN + A L C+QL LA NP++  +E
Sbjct: 127 WNRVAARLECSQLFLAHNPEEKLIE 151


>07_03_1757 +
           29250163-29250349,29250612-29250813,29250898-29251008,
           29251112-29251160,29251247-29251353,29251439-29251942,
           29252486-29252614,29252865-29253161,29253274-29253720,
           29253828-29253893,29254109-29254169,29254314-29254463,
           29254555-29254689,29254791-29254818,29255430-29255479
          Length = 840

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = -3

Query: 257 GSALHFVISLSNSVHSTFD-KIMSSVIPATGISLGSKNQSSGFKARPN*LQTNAAL-IIF 84
           G+ ++FV    +  H  F  +    V  +  +SL   N  SG +ARP  +  +  L  IF
Sbjct: 159 GAKINFVTWSPDGQHMAFTVRYEDKVDNSVNLSLWVANAESG-EARPLCISEDIRLNAIF 217

Query: 83  QR*LHTVPHLSSILTCNLPSFGFLPPK 3
           +  L    + S++L C +PS    PPK
Sbjct: 218 E--LFVWVNDSTVLVCTIPSSRGCPPK 242


>05_01_0078 - 523366-525196,525622-525675,527135-529341
          Length = 1363

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +3

Query: 381 IEKSG--LLDYSSNLFKPALQIDFARHSLESVKIANNYHDGLGILILTCMEPMRSI 542
           IE++G  L DY+ NLFK   Q        E+V+I +   D   +LI+ CM  M+++
Sbjct: 513 IEETGKRLADYA-NLFKVPFQYQGIASRWETVQIEDLNIDKDEVLIVNCMFRMKNL 567


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 46  IDDKWGTVCNYRWNIINAALVCN 114
           +DD W ++ +YRWNI+   L  N
Sbjct: 422 LDDVWDSMDDYRWNILLDPLKSN 444


>02_05_0787 -
           31742685-31742702,31742703-31742744,31742993-31743022,
           31743337-31744183,31744431-31744560,31744682-31744814
          Length = 399

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 250 AEPDTILKIHVRMIMMWESDATKQVGR-ESDLASYQNALIYNMLQLRNLD 396
           AE DTIL++H  +   W + A    GR ++++ +Y N  +   L  + +D
Sbjct: 73  AEKDTILQLHAVLGNKWSAIAKHLPGRTDNEIKNYWNTHLKKDLIQKGID 122


>02_01_0171 -
           1179095-1179388,1179668-1179801,1180036-1180900,
           1180998-1181258,1181424-1181621,1181752-1181982,
           1185337-1185648,1185750-1186247
          Length = 930

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 271 KIHVRMIMMWESDATKQVGRESDLASYQNALIYNMLQL 384
           K+   ++  W+S  +K +G E  +AS Q  L  NML++
Sbjct: 805 KLAEDIVRKWQSIKSKALGPEHSVASLQEVLDGNMLKV 842


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,025,149
Number of Sequences: 37544
Number of extensions: 313737
Number of successful extensions: 675
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)