Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1021
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    69   2e-12
Z81508-4|CAB04139.1|  371|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z83129-3|CAB05641.1|  300|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    28   4.8  
Z81553-7|CAB04496.4|  797|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z72512-2|CAA96664.1|  322|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
 Frame = +1

Query: 7    GGRNPNEGRLQVRIDDKWGTVCNYRWNIINAALVCNQLGLALNP---DDW--FLEPSEIP 171
            G     EGRL+V +DD+WGTVCN  W      L CNQLGL  +    ++W  F EP ++P
Sbjct: 1042 GNYEVTEGRLEVLVDDQWGTVCNRSWTPQLTILACNQLGLVADVQYFENWRIFPEPGDLP 1101

Query: 172  VAGITEDIILSNVECTEFDNDITKCK 249
                   +I+ N+ C E + DITKC+
Sbjct: 1102 -------MIMDNIRCEENEVDITKCR 1120



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
 Frame = +3

Query: 279  CTHDNDVGIRCYETSWAGIRFSVISE------RSDLQYVTIEKSGLLDYSSNLFKPALQI 440
            C     VG+RC E  WAG+R+S+++       ++ +    IEK GL ++ ++ F  A ++
Sbjct: 1132 CRSTEVVGLRCLEPRWAGVRYSLLANPPTVTGQTTMDNWRIEKGGLFNFRTSEFCAAFKV 1191

Query: 441  DFARHSLESVKIANNYHDGLGIL 509
            D+  H+   ++I NN+ DG+ ++
Sbjct: 1192 DWNYHTFHRLEIRNNFWDGIDVV 1214



 Score = 35.5 bits (78), Expect = 0.031
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 1   LLGGRNPNEGRLQVRIDDKWGTVCNY--RWNIINAALVCNQLG 123
           L+ G    +GRLQV+  D+W +VC     W  I+    C  +G
Sbjct: 129 LVDGPTVRQGRLQVQFRDRWRSVCTMVTNWTSIDTGTACRSMG 171


>Z81508-4|CAB04139.1|  371|Caenorhabditis elegans Hypothetical
           protein F20E11.6 protein.
          Length = 371

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 456 SLESVKIANNYHDGLGILILTCMEPMRSIPSGIQNSVTI 572
           SL   +    YH G  IL++T    + S P GI N + +
Sbjct: 238 SLSEKRAKERYHSGRMILVMTIFYTIASAPGGIANFIEV 276


>Z83129-3|CAB05641.1|  300|Caenorhabditis elegans Hypothetical
           protein W06G6.6 protein.
          Length = 300

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 423 KPALQIDFARHSLESVKIANNYHDGLGILILTCMEPMRSIPSGIQNSVTI 572
           + + +I  A HS ++ K    YH G  IL++T    + S P GI + + I
Sbjct: 186 RKSARIASAAHSEKNAK--ERYHSGRMILLMTIFYTITSAPGGISDFIQI 233


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = +3

Query: 348 ISERSDLQYVT---IEKSGLLDYSSNLFKPALQIDFA---RHSLESVKIANNYHDGLGI 506
           ISER  L+ V    I++SG+L    NL + ALQI FA      +E V   NN  +G  I
Sbjct: 221 ISEREMLELVQKFGIDRSGVLSKDKNLLQRALQI-FAGSLSQKVEEVLAENNRINGSSI 278


>Z81553-7|CAB04496.4|  797|Caenorhabditis elegans Hypothetical
           protein F56H6.7 protein.
          Length = 797

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +3

Query: 264 HFENSCTHDNDVGIRCYETSWAGIRFSVISERSDL----QYVTIEKSGLLDYSSNLFKPA 431
           HFE   T+ ND  + CY+   A ++  ++    D+    + +  +K+  L+   N F P 
Sbjct: 204 HFEKH-TNGNDTQVLCYKMKRAAVQQGLVHHDPDVDAIYRLLNADKNSGLNVEFNKFAPP 262

Query: 432 LQIDFARHS 458
           + +    +S
Sbjct: 263 ITLSVGTYS 271


>Z72512-2|CAA96664.1|  322|Caenorhabditis elegans Hypothetical
           protein R07B5.4 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +1

Query: 382 LRNLDC*IIPRTSLSQHFKLTLLDTVWKALKLQIIIMMVWVYLF*LVWSRCDQYRPEFRI 561
           L+N +  ++     +  F++ LL  +W A  + +  ++V + L  +  S C  Y+PE  +
Sbjct: 51  LKNRNSDVLKSGLRADVFRIFLLMQLWNAFHVLLDFLVVRIPLTSIFTSYCSLYKPEVAL 110

Query: 562 Q 564
           +
Sbjct: 111 K 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,500,117
Number of Sequences: 27780
Number of extensions: 302299
Number of successful extensions: 802
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)