Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1021
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   5.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/44 (22%), Positives = 19/44 (43%)
 Frame = +1

Query: 223 FDNDITKCKAEPDTILKIHVRMIMMWESDATKQVGRESDLASYQ 354
           + +D  +CK + +++      MI  W+ D    V    +L   Q
Sbjct: 170 YPHDTQECKLQMESLSHTTDEMIFQWDPDVPLVVDENIELPQLQ 213


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 283 RMIMMWESDATKQVGRESDLASYQNALIYNML 378
           RM+ +   +   Q  R +D+     ALIYN+L
Sbjct: 730 RMLYLRGREVVAQRERAADMKRRNGALIYNIL 761


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 501 GILILTCMEPMRSIPSG 551
           G +I+ C EP+ + P+G
Sbjct: 708 GFVIIECQEPVTNRPTG 724


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 267 FENSCTHDNDVGIRCY 314
           FE+ C  D  VG+R Y
Sbjct: 339 FEHPCVMDCKVGVRTY 354


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 267 FENSCTHDNDVGIRCY 314
           FE+ C  D  VG+R Y
Sbjct: 254 FEHPCVMDCKVGVRTY 269


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 267 FENSCTHDNDVGIRCY 314
           FE+ C  D  VG+R Y
Sbjct: 573 FEHPCVMDCKVGVRTY 588


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,305
Number of Sequences: 438
Number of extensions: 3704
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)