Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1020
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   3.4  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   3.4  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        25   5.9  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   5.9  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   5.9  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   5.9  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   7.8  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    25   7.8  

>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +2

Query: 350  KQRILHEQLSSIEEQLTTITRQMKDKINM 436
            + ++LH Q  S+ +Q+T + +   + +N+
Sbjct: 1159 QNKLLHSQFDSLSQQITVLQQNSSENLNI 1187


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 296 ALDRVYNIATEQKAAKVEKQRILHEQLSSIEEQLT 400
           AL    +I  E+  ++VE   ++HE+LSS+E Q+T
Sbjct: 881 ALAHEKDILVERANSRVE---VVHERLSSLENQVT 912


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = +2

Query: 302 DRVYNIATEQKAAKVEKQRILHEQLSSIE-EQLT--TITRQMKD--KINMDG*ERGAQGI 466
           D+VYN ++E++A +V     L     S + E+L   T+  +  D  +   DG E G + I
Sbjct: 408 DKVYNCSSEEEAQQVASGVTLEVAYESTDHEKLANDTVNEEKADNTESKADGSENGEKQI 467

Query: 467 F 469
           F
Sbjct: 468 F 468


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 103  ASLADMKKILSSASLGEHTRSSRDK 29
            ASL    KIL+SAS  E +R+S +K
Sbjct: 1051 ASLTKATKILNSASSIEQSRNSEEK 1075


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 97  LADMKKILSSASLGEHTRSSRDKKSTQRFAC 5
           L +  K L S  L    R+S  K+  QRFAC
Sbjct: 906 LLNTTKALRSCILSTEERASNMKEIIQRFAC 936


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 7/23 (30%), Positives = 17/23 (73%)
 Frame = +3

Query: 6   HANRCVDFLSRELRVCSPKEAEE 74
           + + C +FL ++L++ SPK+ ++
Sbjct: 461 YGDMCAEFLCKKLKIQSPKDVKQ 483


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 192 PRTRSSAPGDPPPGSEKRQVSLDHAS 115
           P ++S+A    PP SE+  VS+D +S
Sbjct: 238 PISKSNAGSSSPPRSEESFVSMDSSS 263


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 293 AALDRVYNIATEQKAAKVEKQRILHEQLSSIEEQL 397
           A L    N   EQK  +  K+ +L EQL  I+ +L
Sbjct: 428 AQLQHKINKEIEQKITQRHKEYLLTEQLKQIKREL 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,614,466
Number of Sequences: 5004
Number of extensions: 26825
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)