Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1020
(475 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-63... 31 0.36
01_06_1261 - 35826513-35828941,35829201-35829294 31 0.47
01_01_0699 + 5405178-5405356,5405478-5405693,5405808-5405919,540... 31 0.63
05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610 29 1.4
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758 29 1.9
06_01_0276 + 2035763-2036770 29 1.9
03_02_0264 - 6960771-6961426,6961935-6962011,6962122-6962172,696... 29 1.9
02_05_0548 + 29896648-29896701,29896818-29897021,29897451-298977... 29 1.9
04_04_0091 + 22758061-22758342,22758624-22758770 28 3.3
03_02_0937 + 12558674-12558703,12559505-12559621,12560095-125602... 28 3.3
11_06_0611 + 25461469-25461655,25461670-25462238 28 4.4
08_01_0552 - 4842417-4842632,4842878-4843378 28 4.4
02_05_0600 - 30273080-30274692,30274709-30274949 28 4.4
06_01_0672 - 4903126-4903219,4903322-4903430,4903620-4905096,490... 27 5.8
12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422... 27 7.7
11_04_0467 + 18039458-18039638,18040136-18040227,18040336-180404... 27 7.7
10_08_0930 - 21641818-21642240,21642731-21642820,21642902-216429... 27 7.7
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422... 27 7.7
05_04_0380 + 20792090-20792662 27 7.7
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084... 27 7.7
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151... 27 7.7
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338... 27 7.7
>08_01_0087 +
630355-630403,630502-630699,631858-631943,632238-632946,
633029-633194,633459-633934,634023-634873,635078-635987,
636597-636784
Length = 1210
Score = 31.5 bits (68), Expect = 0.36
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 302 DRVYNIATEQKAAKVEKQRILHEQLSSIEEQLTTITRQMKDKINM 436
D+ + TEQK AKV +QR H+ L+ E++L R+ + NM
Sbjct: 163 DKPATLTTEQKQAKVNRQRSRHQSLTK-EQRLDMNARRRVARQNM 206
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 31.1 bits (67), Expect = 0.47
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +2
Query: 236 AHQVRADSRRGKNIAGDVMAALDRVYNIATEQKAAKVEKQRILHEQLSSIEEQLTTITR 412
A A R KN A ++ LD + ++KAA +E L E+L +EE L TI R
Sbjct: 345 ASSQNAQINRMKNEADELQKRLDSL----EDEKAALIEDSSKLSERLKQVEEVLQTIQR 399
>01_01_0699 +
5405178-5405356,5405478-5405693,5405808-5405919,
5406335-5406397,5406468-5406606,5406822-5406877,
5408088-5408161,5408270-5408417,5408505-5408678,
5408809-5408896,5408996-5409109,5409728-5409825,
5409927-5410017,5410440-5410534,5410672-5410825,
5410864-5410876,5411276-5411384
Length = 640
Score = 30.7 bits (66), Expect = 0.63
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -2
Query: 309 TRSRAAMTSPAMFLPRRESARTWCARPTG*CTPRTCARSPRTRSSAPGDPPPGSEKRQV 133
+ + AA +SP F +W RPT P + R+ T S P PP G + V
Sbjct: 10 SHASAASSSPLPFAAAHPCRASWTPRPTSPLPPLSLLRA--TASMHPSPPPEGHSDQPV 66
>05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610
Length = 164
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 137 CLFSDPGGGSPGALL--RVRGLRAQVRGVHQPVGRAHQVRADS 259
CLF DP GG P +L R L + V P G+ + AD+
Sbjct: 71 CLFEDPHGGDPRVILTKRAASLSSHSGEVSLPGGKVEEGDADA 113
>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
Length = 223
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -2
Query: 291 MTSPAMFLPRRESARTWCARPTG*CTPRTCARSPRTRSSAPGDPPPGSEKRQVS 130
++SP + R+ +R + +PRT SP + + APG P P VS
Sbjct: 64 LSSPGSSASPNPAPRSRSSRRSPLASPRTGTASPLSAAVAPGGPAPSPASAAVS 117
>06_01_0276 + 2035763-2036770
Length = 335
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 143 FSDPGGGSPGALLRVRGLRAQVRGVHQPVGRAHQVRADSRRGKNIAGDVM-AALDRVY 313
F GGG G L V A GVH+ GRAH +DS + DV+ A +DR +
Sbjct: 261 FCGGGGGIRGGLEHV----AAALGVHRAAGRAHNAGSDSL----LTSDVLHAMVDRFF 310
>03_02_0264 -
6960771-6961426,6961935-6962011,6962122-6962172,
6962294-6962367,6962463-6962551,6962780-6962862,
6963522-6964062,6964144-6964339
Length = 588
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 316 HSNRAKSSQGREAEDTSRAAVVHRGTADHHHE 411
H SQG+EAED SRAA H ++++
Sbjct: 87 HDPATYYSQGQEAEDASRAAYQHHQLVPYNYQ 118
>02_05_0548 +
29896648-29896701,29896818-29897021,29897451-29897708,
29897821-29898036,29898130-29898285,29898396-29898707,
29898795-29898882,29899055-29899203,29899390-29899722
Length = 589
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 269 KNIAGDVMAALDRVYNIATEQKAAKVEKQRILHEQLSSIEEQLTT 403
KNI+ + ++ LDR E K ++EK + L QL + + + T
Sbjct: 217 KNISNETLSKLDRTIGTLNEDKRLRLEKLQELATQLYDLWDLMDT 261
>04_04_0091 + 22758061-22758342,22758624-22758770
Length = 142
Score = 28.3 bits (60), Expect = 3.3
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 155 GGGSPGALLRVRGLRAQVRGVHQPVGRAHQV-RADSRRGKNIAGDVMAALDRVYNIATEQ 331
GGG+ G +LR+R RA V GRA +V RA R+ +AG + N A
Sbjct: 14 GGGTAGRVLRLRQPRADGVHVVAVPGRAGRVTRAVGRQAVMLAGAALFFAGAAVNAAAVN 73
Query: 332 KAAKVEKQRIL 364
A + +L
Sbjct: 74 IAMLIVDSMLL 84
>03_02_0937 +
12558674-12558703,12559505-12559621,12560095-12560265,
12560499-12560614,12561196-12561253
Length = 163
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +1
Query: 388 GTADHHHETDEGQDQHGWLR--AWS 456
G+ HH+ D+ D GW R AWS
Sbjct: 130 GSGGDHHDDDDDDDDDGWSREQAWS 154
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -2
Query: 294 AMTSPAMFLPRRESARTWCARPTG*CTPRTCARSPRTRSSAPGDPPP 154
A SP LPR E+ R+ +R T P ++A G PPP
Sbjct: 100 ACLSPPPPLPRAETGRSAASRATAASPPVGSGGGEGATAAAVGPPPP 146
>08_01_0552 - 4842417-4842632,4842878-4843378
Length = 238
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 155 GGGSPGALLRVRGLRAQVRGVHQPVGRAHQVRADSRRGKNIAGDVM 292
G GS G R G+ A+ + P G A+ RG N+A V+
Sbjct: 150 GNGSDGGFAREHGMDAEQVKIDIPSGAANAAADADARGGNLASAVI 195
>02_05_0600 - 30273080-30274692,30274709-30274949
Length = 617
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -2
Query: 267 PRRESARTWCARPTG*CTPRTCARSPRTRSSAPGDPPPG 151
P SA WC R G R C S + + P PP G
Sbjct: 451 PAASSAADWCFRLHGWPLCRRCWASTSSPTGLPSPPPTG 489
>06_01_0672 -
4903126-4903219,4903322-4903430,4903620-4905096,
4906200-4906538
Length = 672
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -2
Query: 300 RAAMTSPAMFLPRRESARTWCARPTG*C-TPRTCARSPRTRSSAPGDPPPGSEKRQ 136
R++ + A R + RT P G +PR + +P R AP P P S R+
Sbjct: 131 RSSSATKATLSRPRTTPRTTTPSPAGAAASPRLSSSNPDARRRAPPQPEPPSTPRK 186
>12_02_0849 -
23640091-23640279,23640537-23640677,23640756-23642203,
23642300-23642372,23642452-23642572,23642689-23642791,
23642979-23643052,23643140-23643285,23643368-23643476,
23643580-23643704,23643989-23644342,23644440-23644503,
23644581-23645032
Length = 1132
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 103 ASLADMKKILSSASLGEHTRSSRDKKS-TQRFAC 5
A+ DM+ IL+SA++ RSS KKS T + +C
Sbjct: 425 ATSQDMRFILTSANVAPWNRSSHPKKSVTNKESC 458
>11_04_0467 + 18039458-18039638,18040136-18040227,18040336-18040452,
18041228-18041313,18041385-18041643,18041761-18041957,
18042181-18042213,18043371-18043862,18044236-18044299,
18045478-18045618,18045726-18045803,18047077-18047166,
18047260-18047352,18047430-18047489,18047567-18047635,
18047737-18047823,18048337-18048379,18048517-18048587,
18049050-18049143,18050335-18050447,18050909-18050998,
18051075-18051155,18052211-18052291,18052369-18052464,
18052543-18052599,18052693-18052737,18052807-18052872,
18052961-18052999
Length = 1004
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 269 KNIAGDVMAALDR-VYNIATEQKAAKVEKQRILHEQLSSIEEQLTTITRQMKDKINMDG* 445
K+IA LDR + ++ EQ+A +EKQR ++ + LT + ++KD +
Sbjct: 830 KHIAKSQFVQLDRKLITLSLEQRAQILEKQRQINTYAECLRNILTDL--KLKDGLQSLMS 887
Query: 446 ERGAQGIF 469
E +G F
Sbjct: 888 ELEVEGFF 895
>10_08_0930 -
21641818-21642240,21642731-21642820,21642902-21642984,
21643512-21643605,21644366-21644488,21644893-21645168
Length = 362
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 155 GGGSPGALLRV-RGLRAQVRGVHQPVGRAHQVRADSRRGK-NIAGDVMAALDRVYNI 319
GGG GALL++ RG A V + G +V D++R + ++ VYN+
Sbjct: 19 GGGGGGALLQLRRGAAAAAAAVEEEGGVVMRVAFDAKRAAVGVGARMLFYPTLVYNV 75
>07_03_0203 +
15138864-15140452,15140629-15140726,15141924-15142235,
15142437-15142749,15144025-15146023,15147033-15147068
Length = 1448
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 58 LKRLKKGFSSYPPRKLCSPGCVIERNLSL 144
LKRLK GF+++ + CS IE LSL
Sbjct: 404 LKRLKLGFNAHGAEEYCSTSVGIEFLLSL 432
>05_04_0380 + 20792090-20792662
Length = 190
Score = 27.1 bits (57), Expect = 7.7
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Frame = +2
Query: 155 GGGSPGALLRVRGLRAQVRGVHQPVGRAHQVRADSRRGKNIAGD--VMAALDRVYNIATE 328
GGG PGA+ R +R G+ + G ++ + + GD AA + E
Sbjct: 83 GGGLPGAVRRAFSMRRHPAGLGKGDGYYWRIHDNMDGDSDDDGDNPAAAAAEEEERDKKE 142
Query: 329 QKAAKVEKQRILHEQLSSIEEQLTTITRQMKDKINMDG 442
Q A ++++ EQL+ ++ ++T K G
Sbjct: 143 QLAESADEKK--KEQLAEAADEKVSVTATATPKKKKGG 178
>04_04_1536 -
34207425-34207490,34207801-34208268,34208345-34208485,
34208582-34208820,34209950-34210436
Length = 466
Score = 27.1 bits (57), Expect = 7.7
Identities = 24/76 (31%), Positives = 31/76 (40%)
Frame = +2
Query: 146 SDPGGGSPGALLRVRGLRAQVRGVHQPVGRAHQVRADSRRGKNIAGDVMAALDRVYNIAT 325
++ GGGSP AL R V + AH RAD R G + + A L AT
Sbjct: 57 AENGGGSPNALGGEHERRFLVFWDNLKFVDAHNARADERGGFRLGMNRFADLTNEEFRAT 116
Query: 326 EQKAAKVEKQRILHEQ 373
A E+ R E+
Sbjct: 117 FLGAKVAERSRAAGER 132
>04_04_1049 +
30414545-30414596,30414732-30414853,30415121-30415198,
30415329-30415459,30415644-30417552,30417797-30417836,
30418194-30418259,30418583-30418734
Length = 849
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 309 TRSRAAMTSPAMFLPRRESARTWCARPTG*CTPRTCARSPRTRSSAPGDPPPGSEKRQVS 130
T S + TS ++P R+ +W P P P+ R +AP PP + R ++
Sbjct: 461 TSSTSGYTSS--WVPPRDKVPSWVPPPPRGNAPSWVPPPPQPRGNAPSCVPPPPQSRGIA 518
>02_05_0336 +
28033315-28033365,28033580-28033585,28033798-28033884,
28034741-28034830,28035736-28037778,28037916-28038062,
28038148-28038560,28038656-28038755
Length = 978
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 320 ATEQKAAKVEKQRILHEQLSSIEEQLTTITRQMKDK 427
A + KA + IL E++ ++EQ+TT+ +Q + +
Sbjct: 735 ANDSKAELDLMENILLEEVKQLQEQVTTLAKQCRQR 770
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,790,836
Number of Sequences: 37544
Number of extensions: 228995
Number of successful extensions: 1243
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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