Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1020
(475 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4104| Best HMM Match : Fzo_mitofusin (HMM E-Value=0) 43 1e-04
SB_15759| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9) 29 2.0
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 29 2.6
SB_21199| Best HMM Match : SBP (HMM E-Value=6) 28 3.4
SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_50825| Best HMM Match : DUF1168 (HMM E-Value=4.1) 27 6.0
SB_35009| Best HMM Match : Phe_tRNA-synt_N (HMM E-Value=4) 27 6.0
SB_1216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_22679| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 6.0
SB_6515| Best HMM Match : Phe_tRNA-synt_N (HMM E-Value=4) 27 6.0
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_33925| Best HMM Match : DUF947 (HMM E-Value=2.2) 27 7.9
SB_31871| Best HMM Match : DUF947 (HMM E-Value=2.2) 27 7.9
SB_26217| Best HMM Match : DUF947 (HMM E-Value=2.2) 27 7.9
>SB_4104| Best HMM Match : Fzo_mitofusin (HMM E-Value=0)
Length = 613
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +3
Query: 105 LLTRMRDRE--KPVSSPILAEGHQVRYFEFVDFERKFEECISQSAVRTKF 248
L++RM+ + I +G R EF +FE KFEECIS+SA++TKF
Sbjct: 261 LMSRMQKHQGMPEEGGAIHVDGFHGRKLEFENFEHKFEECISKSAIQTKF 310
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 266 GKNIAGDVMAALDRVYNIATEQKAAKVEKQRILHEQLSSIEEQLTTITRQMKDKI 430
G I V L+++ A E + + +R +L ++EQL T + K+KI
Sbjct: 317 GIGIVNAVQNILEQIAGCAYEHRKRLISAKRERENRLEFVKEQLDYCTNECKEKI 371
>SB_15759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 31 YRASCACALLKRLKKGFSSYPPRKLCSPGCVI 126
Y A CA AL L G PP++ C C I
Sbjct: 4 YLALCALALSCLLTHGLEQSPPKRCCHKSCTI 35
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +1
Query: 49 CALLKRLKKGFSSYPPRKLCSPGCVIERNLSLLRSW 156
C L LK PP L SP V++ N SLL W
Sbjct: 1948 CTLGPALKTRTGELPPEGLKSPSIVVQGNDSLLVQW 1983
>SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)
Length = 930
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -2
Query: 312 YTRSRAAMTSPAMFLPRRESARTWCARPTG*CTPRTCARSP-RTRSSAPGDPPPGSEKR 139
Y+ +R TSP F+ + C+ P + R P R RSS+P PP S R
Sbjct: 293 YSWNRGKCTSPTFFVCQLSHRCATCSGPHPQVECASRGRKPNRARSSSPSTKPPKSPIR 351
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = +3
Query: 198 ERKFEECISQSAVRTKF---AQTRAAARTSPGTSWRLSTGCTT*QQSKKQPRSRSR 356
+RKF++ +S R++ + +R +R+S + R +G + QSK++ RSRSR
Sbjct: 282 DRKFKKSQRKSRSRSRNRSRSHSRKRSRSSSRSKSRKKSGSRSNSQSKQKSRSRSR 337
>SB_21199| Best HMM Match : SBP (HMM E-Value=6)
Length = 341
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/75 (21%), Positives = 39/75 (52%)
Frame = +2
Query: 197 RAQVRGVHQPVGRAHQVRADSRRGKNIAGDVMAALDRVYNIATEQKAAKVEKQRILHEQL 376
R + + V + V + ++ + + +++ DV+ ++Y TE++ + +EK I E
Sbjct: 207 RRKAKNVSRVVEQLWELEEELGKSRSVPKDVLMKQPKLYGRLTEEELSGIEKDII--ESN 264
Query: 377 SSIEEQLTTITRQMK 421
+ E + TT+ ++ K
Sbjct: 265 AHKERKSTTLKKKAK 279
>SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 302 DRVYNIATEQKAAKVEKQRILHEQLSSIEEQLTTITRQM 418
DR++N + A+ +E QR+ +L IE +T + Q+
Sbjct: 255 DRLFNDGKKYGASSIEAQRVAQMKLDPIESNVTQVFFQV 293
>SB_50825| Best HMM Match : DUF1168 (HMM E-Value=4.1)
Length = 543
Score = 27.5 bits (58), Expect = 6.0
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Frame = +3
Query: 3 QHANRCVDFLSRELRVCSPKEAEERI----FFISAKEALLTRMRDREKPVSSPILAEGHQ 170
+ ++ VDF + V P+E E++ + E ++ RDR +P+ + +
Sbjct: 55 EEPHKPVDFTEGD--VSEPEEEEKQTPPKQTGVPVSEDVVASSRDRTEPLPDFEDVKEPE 112
Query: 171 VRYFEFVDFERKFEECISQSAVRTKFAQTRAAARTSPG 284
+ EFVD E + I + V TK TR G
Sbjct: 113 EEFEEFVDEEGRVVRRIVRRTVTTKTVTTRTVTSDQAG 150
>SB_35009| Best HMM Match : Phe_tRNA-synt_N (HMM E-Value=4)
Length = 271
Score = 27.5 bits (58), Expect = 6.0
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +3
Query: 36 RELRVC--SPKEAEERIFFISAKEALLTRMRDREKPVSSPILAEGHQVRYFEFVDFERKF 209
+EL+ C P A E +A L + + + E S IL E + EF + KF
Sbjct: 32 KELKTCLDDPSRANE---IQTALNELQSALNNYEDCYQSYILEE---LATDEFNRVKEKF 85
Query: 210 EECISQSAVRTKFAQTRAAARTSPGTSWRLST 305
EE ++ TK A R S T RLS+
Sbjct: 86 EETRNECETTTKLANERLKKGKSNSTKSRLSS 117
>SB_1216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1834
Score = 27.5 bits (58), Expect = 6.0
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +3
Query: 36 RELRVC--SPKEAEERIFFISAKEALLTRMRDREKPVSSPILAEGHQVRYFEFVDFERKF 209
+EL+ C P A E +A L + + + E S IL E + EF + KF
Sbjct: 32 KELKTCLDDPSRANE---IQTALNELQSALNNYEDCYQSYILEE---LATDEFNRVKEKF 85
Query: 210 EECISQSAVRTKFAQTRAAARTSPGTSWRLST 305
EE ++ TK A R S T RLS+
Sbjct: 86 EETRNECETTTKLANERLKKGKSNSTKSRLSS 117
>SB_22679| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 894
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 460 LCSTLSTIHVDLVLHLSRDGGQLFLYG 380
+C LS HVD+ LSR GQL +G
Sbjct: 17 VCDALSVFHVDMTFRLSR-RGQLVRHG 42
>SB_6515| Best HMM Match : Phe_tRNA-synt_N (HMM E-Value=4)
Length = 242
Score = 27.5 bits (58), Expect = 6.0
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +3
Query: 36 RELRVC--SPKEAEERIFFISAKEALLTRMRDREKPVSSPILAEGHQVRYFEFVDFERKF 209
+EL+ C P A E +A L + + + E S IL E + EF + KF
Sbjct: 32 KELKTCLDDPSRANE---IQTALNELQSALNNYEDCYQSYILEE---LATDEFNRVKEKF 85
Query: 210 EECISQSAVRTKFAQTRAAARTSPGTSWRLST 305
EE ++ TK A R S T RLS+
Sbjct: 86 EETRNECETTTKLANERLKKGKSNSTKSRLSS 117
>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1515
Score = 27.5 bits (58), Expect = 6.0
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +3
Query: 36 RELRVC--SPKEAEERIFFISAKEALLTRMRDREKPVSSPILAEGHQVRYFEFVDFERKF 209
+EL+ C P A E +A L + + + E S IL E + EF + KF
Sbjct: 32 KELKTCLDDPSRANE---IQTALNELQSALNNYEDCYQSYILEE---LATDEFNRVKEKF 85
Query: 210 EECISQSAVRTKFAQTRAAARTSPGTSWRLST 305
EE ++ TK A R S T RLS+
Sbjct: 86 EETRNECETTTKLANERLKKGKSNSTKSRLSS 117
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 245 VRADSRRGKNIAGDVMAALDRVYNIATEQKAAKVEKQRILHEQ 373
V + R G ++A D+M +LDR Y + + A + I+H Q
Sbjct: 91 VEFNGRSGDDLAADLMRSLDRTY---SNKSAIDLSSLSIIHGQ 130
>SB_33925| Best HMM Match : DUF947 (HMM E-Value=2.2)
Length = 117
Score = 27.1 bits (57), Expect = 7.9
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = +3
Query: 36 RELRVC--SPKEAEERIFFISAKEALLTRMRDREKPVSSPILAEGHQVRYFEFVDFERKF 209
+EL+ C P A E +A L + + + E S IL E + EF + KF
Sbjct: 32 KELKTCLDDPSRANE---IQTALNELQSALNNYEDCYQSYILEE---LATDEFNRVKEKF 85
Query: 210 EECISQSAVRTKFAQTRAAARTSPGTSWRLS 302
EE ++ TK A R S T RLS
Sbjct: 86 EETRNECETTTKLANERLKKGKSNSTKSRLS 116
>SB_31871| Best HMM Match : DUF947 (HMM E-Value=2.2)
Length = 117
Score = 27.1 bits (57), Expect = 7.9
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = +3
Query: 36 RELRVC--SPKEAEERIFFISAKEALLTRMRDREKPVSSPILAEGHQVRYFEFVDFERKF 209
+EL+ C P A E +A L + + + E S IL E + EF + KF
Sbjct: 32 KELKTCLDDPSRANE---IQTALNELQSALNNYEDCYQSYILEE---LATDEFNRVKEKF 85
Query: 210 EECISQSAVRTKFAQTRAAARTSPGTSWRLS 302
EE ++ TK A R S T RLS
Sbjct: 86 EETRNECETTTKLANERLKKGKSNSTKSRLS 116
>SB_26217| Best HMM Match : DUF947 (HMM E-Value=2.2)
Length = 117
Score = 27.1 bits (57), Expect = 7.9
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = +3
Query: 36 RELRVC--SPKEAEERIFFISAKEALLTRMRDREKPVSSPILAEGHQVRYFEFVDFERKF 209
+EL+ C P A E +A L + + + E S IL E + EF + KF
Sbjct: 32 KELKTCLDDPSRANE---IQTALNELQSALNNYEDCYQSYILEE---LATDEFNRVKEKF 85
Query: 210 EECISQSAVRTKFAQTRAAARTSPGTSWRLS 302
EE ++ TK A R S T RLS
Sbjct: 86 EETRNECETTTKLANERLKKGKSNSTKSRLS 116
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,923,641
Number of Sequences: 59808
Number of extensions: 237735
Number of successful extensions: 1017
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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