Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1020
(475 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 26 0.18
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 26 0.18
DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 vari... 23 1.7
DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 vari... 23 1.7
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 23 2.2
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 23 2.2
AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein. 23 2.2
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 23 2.2
DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 22 3.8
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 22 3.8
AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 22 3.8
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 26.2 bits (55), Expect = 0.18
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 152 PGGGSPGALLRVRGLRAQVRGVHQPVGR 235
PG G LLR+ G+ + RG++Q + R
Sbjct: 375 PGTGRQSELLRLNGINREDRGMYQCIVR 402
Score = 21.8 bits (44), Expect = 3.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 216 TPRTCARSPRTRSSAPGDPP 157
+P + S RT+ APG PP
Sbjct: 1484 SPSSPVLSVRTQGQAPGIPP 1503
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 26.2 bits (55), Expect = 0.18
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 152 PGGGSPGALLRVRGLRAQVRGVHQPVGR 235
PG G LLR+ G+ + RG++Q + R
Sbjct: 375 PGTGRQSELLRLNGINREDRGMYQCIVR 402
Score = 21.8 bits (44), Expect = 3.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 216 TPRTCARSPRTRSSAPGDPP 157
+P + S RT+ APG PP
Sbjct: 1480 SPSSPVLSVRTQGQAPGIPP 1499
>DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 variant
2 precursor protein.
Length = 94
Score = 23.0 bits (47), Expect = 1.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 100 KLCSPGCVIERNLSLLRSWRRV 165
K+C+PGCV L LR+ ++V
Sbjct: 65 KICAPGCVC--RLGYLRNKKKV 84
>DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 variant
1 precursor protein.
Length = 92
Score = 23.0 bits (47), Expect = 1.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 100 KLCSPGCVIERNLSLLRSWRRV 165
K+C+PGCV L LR+ ++V
Sbjct: 65 KICAPGCVC--RLGYLRNKKKV 84
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 22.6 bits (46), Expect = 2.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 149 DPGGGSPGALLRVRGLRAQVRGVHQP 226
+PG G PG ++ L+ Q++ + QP
Sbjct: 25 EPGPGLPGQEVKQSFLKNQLQALFQP 50
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.6 bits (46), Expect = 2.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 149 DPGGGSPGALLRVRGLRAQVRGVHQP 226
+PG G PG ++ L+ Q++ + QP
Sbjct: 25 EPGPGLPGQEVKQSFLKNQLQALFQP 50
>AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein.
Length = 200
Score = 22.6 bits (46), Expect = 2.2
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +1
Query: 313 QHSNRAKSSQGREAEDTSRAAVVHRGTADHHHETDE 420
QHS + S+ +S V A HHH+ +
Sbjct: 70 QHSGSSASTSPAARTTSSMYPYVSAAAAHHHHQQQQ 105
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.6 bits (46), Expect = 2.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 149 DPGGGSPGALLRVRGLRAQVRGVHQP 226
+PG G PG ++ L+ Q++ + QP
Sbjct: 25 EPGPGLPGQEVKQSFLKNQLQALFQP 50
>DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2
protein.
Length = 117
Score = 21.8 bits (44), Expect = 3.8
Identities = 9/38 (23%), Positives = 18/38 (47%)
Frame = +2
Query: 308 VYNIATEQKAAKVEKQRILHEQLSSIEEQLTTITRQMK 421
+Y + E + + + R+ EQL+ + RQ+K
Sbjct: 16 IYTVTAETEEGQSGRSRVSDEQLNMALSDQRYLRRQLK 53
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 21.8 bits (44), Expect = 3.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +2
Query: 278 AGDVMAALDRVYNIATEQKA 337
+G A LD++++IAT++ A
Sbjct: 351 SGPDSAKLDKIFDIATKENA 370
>AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein
protein.
Length = 117
Score = 21.8 bits (44), Expect = 3.8
Identities = 9/38 (23%), Positives = 18/38 (47%)
Frame = +2
Query: 308 VYNIATEQKAAKVEKQRILHEQLSSIEEQLTTITRQMK 421
+Y + E + + + R+ EQL+ + RQ+K
Sbjct: 16 IYTVTAETEEGQSGRSRVSDEQLNMALSDQRYLRRQLK 53
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,456
Number of Sequences: 438
Number of extensions: 2041
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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