Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1020
(475 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49580.1 68414.m05559 calcium-dependent protein kinase, putat... 29 2.1
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 29 2.1
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 28 2.8
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS... 28 2.8
At4g32190.1 68417.m04581 centromeric protein-related low similar... 28 3.7
At4g10610.1 68417.m01735 RNA-binding protein, putative 28 3.7
At1g43760.1 68414.m05034 hypothetical protein 28 3.7
At5g24750.1 68418.m02921 expressed protein 27 4.9
At3g08950.1 68416.m01045 electron transport SCO1/SenC family pro... 27 4.9
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 27 6.5
At3g51650.1 68416.m05664 expressed protein 27 6.5
At2g35320.1 68415.m04331 expressed protein 27 6.5
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel... 27 8.6
At4g14700.1 68417.m02259 replication control protein, putative s... 27 8.6
At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger) fa... 27 8.6
At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger) fa... 27 8.6
>At1g49580.1 68414.m05559 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium/calmodulin-dependent
protein kinase CaMK3 [Nicotiana tabacum]
gi|16904226|gb|AAL30820; contains protein kinase domain,
Pfam:PF00069; contains serine/threonine protein kinase
domain, INTERPRO:IPR002290
Length = 606
Score = 28.7 bits (61), Expect = 2.1
Identities = 24/69 (34%), Positives = 30/69 (43%)
Frame = +2
Query: 149 DPGGGSPGALLRVRGLRAQVRGVHQPVGRAHQVRADSRRGKNIAGDVMAALDRVYNIATE 328
D GGG L LR Q+R P A +RA RR K G AAL V + TE
Sbjct: 69 DVGGGGESKSLTSTPLR-QLRRAFHPPSPAKHIRAALRRRK---GKKEAALSGVTQLTTE 124
Query: 329 QKAAKVEKQ 355
+ E++
Sbjct: 125 VPQREEEEE 133
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 345 TLAAFCSVAMLYTRSRAAMTSPAMFLPRRESARTWCAR 232
T+ F V +L +++ A +P FLPR E R CAR
Sbjct: 234 TMLGFYPVKVLPSKTAIAPVNPT-FLPRTEDEREMCAR 270
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-containing
protein similarity to TETRATRICOPEPTIDE REPEAT PROTEIN 2
, human, SWISSPROT:TTC2_HUMAN; contains Pfam profiles
PF00226: DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 296 ALDRVYNIATEQKAAKVEKQRILHEQLSSIEEQLTTITRQMKDK 427
ALD+ Y+ A ++A E R + S +E + +T+QM++K
Sbjct: 945 ALDQNYSKAISRRATLFEMIRDYGQAASDMERYVNILTKQMEEK 988
>At4g26090.1 68417.m03756 disease resistance protein RPS2
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
identical to RPS2 (gi:13661831)
Length = 909
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 138 VSSPILAEGHQVRYFEFVDFERKFEECISQSAV 236
+++ ++ +GHQ +V R+F EC Q AV
Sbjct: 195 INNELITKGHQYDVLIWVQMSREFGECTIQQAV 227
>At4g32190.1 68417.m04581 centromeric protein-related low similarity
to SP|Q02224 Centromeric protein E (CENP-E protein)
{Homo sapiens}
Length = 783
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +2
Query: 227 VGRAHQVRADSRRGKNIAGDVMAALDRVYNIATEQKAAKVEKQRILHEQLSSIEEQLTTI 406
+G A++ D + K + DV L + EK+ +L +QL +EEQ ++
Sbjct: 314 LGEANETMEDFMKVKKLLTDVRFELISSREALVFSREQMEEKELLLEKQLEELEEQRKSV 373
Query: 407 TRQMK 421
M+
Sbjct: 374 LSYMQ 378
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 345 TLAAFCSVAMLYTRSRAAMTSPAMFLPRRESARTWCAR 232
T+ F V ++ +++ A +P FLPR E R CAR
Sbjct: 211 TMLGFYPVKVMPSKTAIAPVNPT-FLPRTEDEREMCAR 247
>At1g43760.1 68414.m05034 hypothetical protein
Length = 626
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 64 RLKKGFSSYPPRKLCSPGCVIERNLSLLRS 153
R KK SS PPR + S CV +N+ ++ S
Sbjct: 43 RSKKRSSSTPPRLITSQNCVKGKNIEIVPS 72
>At5g24750.1 68418.m02921 expressed protein
Length = 520
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 221 QPVGRAHQVRADSRRGKNIAGDVMAALDRVYN-IATEQKAAKVEKQRILHEQLSSIEEQL 397
QP+ R H + DS KNI +Y+ ++ + +A +E IL S+E+ +
Sbjct: 445 QPLKRNHLLLEDSNDEKNITEAAQVVAKAIYDALSAKTRARAMEIAEIL-----SLEDGV 499
Query: 398 TTITRQMKDKI 430
T R +++++
Sbjct: 500 TEAVRVLREEV 510
>At3g08950.1 68416.m01045 electron transport SCO1/SenC family
protein similar to SP|P23833 SCO1 protein, mitochondrial
precursor {Saccharomyces cerevisiae}; contains Pfam
profile PF02630: SCO1/SenC
Length = 334
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 313 QHSNRAKSSQGREAEDTSRAAVVHRGTADHHHETDEGQDQHGWLRAWSTRYLL 471
+H + ++ E + S + G +DH +E G+D G +W + +LL
Sbjct: 81 KHDSGKPETKSSEKNEKSGGSESSDGGSDHKNERASGKDVRGGPVSWMSFFLL 133
>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
(TITAN3) very strong similarity to SMC2-like condensin
(TITAN3) [Arabidopsis thaliana] GI:14279543; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1175
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 284 DVMAALD-RVYNIATEQKAAKVEKQRILHEQLSSIEEQLTTITRQMKDK 427
DV A L+ + Y+++ K A+ + L E + +EE+L Q+K+K
Sbjct: 712 DVYAQLELKTYDLSLFLKRAEQNEHHKLGEAVKKLEEELEEAKSQIKEK 760
>At3g51650.1 68416.m05664 expressed protein
Length = 826
Score = 27.1 bits (57), Expect = 6.5
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 242 QVRADSRRGKNIAGDVMAALDRVYNIATEQKAAKVEKQRILHEQLSSIEE--QLTTITRQ 415
Q R +R+G+N + +++ A E++ A++EK+ E+ EE +L R+
Sbjct: 233 QRRMLARQGENGTSSHESRVEKARRKAEEKRQARLEKEHSEEEERKQREEVARLVEERRR 292
Query: 416 MKDKI 430
++D+I
Sbjct: 293 LRDEI 297
>At2g35320.1 68415.m04331 expressed protein
Length = 307
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 275 IAGDVMAALDRVYNIATEQKAAKVEKQRILHEQLSSIEE 391
I + M+ LD +YN+ E + R EQ S +EE
Sbjct: 139 IDSESMSGLDELYNVTDEYTDRWLSSARAFLEQCSCVEE 177
>At5g60530.1 68418.m07590 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 439
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/70 (20%), Positives = 34/70 (48%)
Frame = +2
Query: 230 GRAHQVRADSRRGKNIAGDVMAALDRVYNIATEQKAAKVEKQRILHEQLSSIEEQLTTIT 409
G+ ++V+ D +G N + D+ ++KAAK +K++ ++ ++
Sbjct: 36 GKGNEVQVDKGKGDNGKSNGNGPKDKEQEKKDKEKAAKDKKEKEKKDKEEKEKKDKERKE 95
Query: 410 RQMKDKINMD 439
++ KDK+ +
Sbjct: 96 KEKKDKLEKE 105
>At4g14700.1 68417.m02259 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1) [Homo sapiens]
SWISS-PROT:Q13415
Length = 809
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 286 VPGDVLAAARVCANLVRTADWLMHSSNLRSKS 191
+ GD A +C AD+ + SN+ +KS
Sbjct: 650 ISGDARRALEICRRAAEVADYRLKKSNISAKS 681
>At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger)
family protein contains INTERPRO domain, IPR001841, RING
finger
Length = 320
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 328 AKSSQGREAEDTSRAAVVHRGTADHHHETDEGQDQH 435
+ SS + DT+ A G HHH+ + Q QH
Sbjct: 268 SSSSSTQNRRDTNNTATAEEGHY-HHHQQQQQQHQH 302
>At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger)
family protein contains INTERPRO domain, IPR001841, RING
finger
Length = 320
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 328 AKSSQGREAEDTSRAAVVHRGTADHHHETDEGQDQH 435
+ SS + DT+ A G HHH+ + Q QH
Sbjct: 268 SSSSSTQNRRDTNNTATAEEGHY-HHHQQQQQQHQH 302
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,807,515
Number of Sequences: 28952
Number of extensions: 156529
Number of successful extensions: 732
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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