Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1019
         (637 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0IFJ0 Cluster: Putative uncharacterized protein; n=3; ...    79   1e-13
UniRef50_Q96AT1 Cluster: Uncharacterized protein KIAA1143; n=20;...    55   2e-06
UniRef50_UPI0000DB6BFF Cluster: PREDICTED: similar to CG6619-PA;...    48   2e-04
UniRef50_A7S707 Cluster: Predicted protein; n=1; Nematostella ve...    43   0.007
UniRef50_Q5D8V0 Cluster: SJCHGC05203 protein; n=1; Schistosoma j...    40   0.038
UniRef50_Q22790 Cluster: Putative uncharacterized protein; n=2; ...    38   0.15 
UniRef50_Q1ZXH0 Cluster: DNA mismatch repair protein; n=1; Dicty...    38   0.15 
UniRef50_Q22SD4 Cluster: Putative uncharacterized protein; n=2; ...    34   3.3  
UniRef50_A2FZE7 Cluster: Putative uncharacterized protein; n=1; ...    33   4.4  
UniRef50_UPI000049960C Cluster: hypothetical protein 148.t00012;...    33   7.6  
UniRef50_Q54X28 Cluster: U3 snoRNP protein; n=1; Dictyostelium d...    33   7.6  
UniRef50_Q17D96 Cluster: Putative uncharacterized protein; n=1; ...    33   7.6  

>UniRef50_Q0IFJ0 Cluster: Putative uncharacterized protein; n=3;
           Endopterygota|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 140

 Score = 78.6 bits (185), Expect = 1e-13
 Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 6/68 (8%)
 Frame = +3

Query: 33  KRNVAFSKPEDPDFLKRLKKQVGY------DDRNHKFDELENSEKDFVSDEDDEQPQVVV 194
           KRNVA+ KP++PDFLKR+K Q+GY      D++  K   L +SE D   + DDE+PQVVV
Sbjct: 6   KRNVAYIKPDEPDFLKRMKAQIGYKEGPTVDEKRQKIQNLSDSEDDDRDERDDEKPQVVV 65

Query: 195 IKKGDLTA 218
           +K+GDLTA
Sbjct: 66  LKEGDLTA 73


>UniRef50_Q96AT1 Cluster: Uncharacterized protein KIAA1143; n=20;
           Euteleostomi|Rep: Uncharacterized protein KIAA1143 -
           Homo sapiens (Human)
          Length = 154

 Score = 54.8 bits (126), Expect = 2e-06
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
 Frame = +3

Query: 24  MNRKRNVAFSKPEDPDFLKRLKKQVGYDD----RNHKFDELENSEKDFVSDEDDEQPQVV 191
           M+++  V++ +P +P FL R K++VGY +       +       E    SD++DEQPQVV
Sbjct: 1   MSKRNQVSYVRPAEPAFLARFKERVGYREGPTVETKRIQPQPPDEDGDHSDKEDEQPQVV 60

Query: 192 VIKKGDLT 215
           V+KKGDL+
Sbjct: 61  VLKKGDLS 68


>UniRef50_UPI0000DB6BFF Cluster: PREDICTED: similar to CG6619-PA;
           n=1; Apis mellifera|Rep: PREDICTED: similar to CG6619-PA
           - Apis mellifera
          Length = 742

 Score = 47.6 bits (108), Expect = 2e-04
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
 Frame = +3

Query: 15  STEMNR--KRNVAFSKPEDPDFLKRLKKQVGYDDR---NHKFDELENSEKDFVSDEDDEQ 179
           ++EM R  K NV++ KP +P FL+ LK+Q+GY +    + K + L     +   + ++E+
Sbjct: 618 NSEMTRLKKHNVSYIKPNEPKFLRELKEQIGYKEGPTIDTKREILPQDSNNDEEEREEEK 677

Query: 180 PQVVVIKKGDLTA 218
           P VVV+    LTA
Sbjct: 678 PVVVVLNSEHLTA 690


>UniRef50_A7S707 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 112

 Score = 42.7 bits (96), Expect = 0.007
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
 Frame = +3

Query: 36  RNVAFSKPEDPDFLKRLKKQVGY---DDRNHKFDELENSEKDFVSDEDDEQPQVVVIK 200
           RN++++K   P F+++ K++VGY   D+ + K  E E S+K+   D + EQP VV+ K
Sbjct: 4   RNISYTKQATPAFIQQFKERVGYKEPDNVDSKRAEAEKSQKEDEVDREGEQPVVVLGK 61


>UniRef50_Q5D8V0 Cluster: SJCHGC05203 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC05203 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 168

 Score = 40.3 bits (90), Expect = 0.038
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +3

Query: 24  MNRKRNVAFSKPEDPDFLKRLKKQVGY---DDRNHKFDELENSEKDFVSDEDDEQPQVV 191
           M++K  V F + E+P F+++ K++ G    D    K  EL   + D  +  DDEQPQ+V
Sbjct: 1   MSKKPKVQFVQNEEPSFIRQFKERAGIPIADTIESKHTELSIDDNDDDNRPDDEQPQIV 59


>UniRef50_Q22790 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 156

 Score = 38.3 bits (85), Expect = 0.15
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
 Frame = +3

Query: 33  KRNVAFSKPEDPDFLKRLKKQVGYDDRNHKFDELEN--SEKDFVSDEDD-------EQPQ 185
           K N+ F + E+P F+K +K ++GY +     D+ E+     DF  DE D       ++PQ
Sbjct: 15  KANLHFVEQEEPAFIKAMKAKLGYKEPAKLEDKYEDEAGPADFDDDETDLMRMKEEDRPQ 74

Query: 186 VVVI-KKGDLT 215
           VVV+ +K DLT
Sbjct: 75  VVVLNEKTDLT 85


>UniRef50_Q1ZXH0 Cluster: DNA mismatch repair protein; n=1;
           Dictyostelium discoideum AX4|Rep: DNA mismatch repair
           protein - Dictyostelium discoideum AX4
          Length = 1428

 Score = 38.3 bits (85), Expect = 0.15
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = +3

Query: 15  STEMNRKRNVAFSKPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQVVV 194
           +T    K++   SK   P   K+ KK+    D +   DE ++ E+D   D DDE+ +VVV
Sbjct: 153 TTSSRVKKDTEVSKSIPPKLSKQTKKKQISSDNDIYDDEKDSEEEDLEDDHDDEEEKVVV 212

Query: 195 IKKGDLTA 218
            K    T+
Sbjct: 213 KKPSKPTS 220


>UniRef50_Q22SD4 Cluster: Putative uncharacterized protein; n=2;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 4616

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +3

Query: 6    IIISTEMNRKRNVAFSKPEDPDFLK--RLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQ 179
            II+ST      N+ F++ E  + ++  ++ K++  + ++    E  N E DF++ ++ E 
Sbjct: 1799 IIVSTSYKLCSNICFTQYEQKNIIQNQQVSKEMQLNQKSENIKEFSNFEMDFITFQEQES 1858

Query: 180  P 182
            P
Sbjct: 1859 P 1859


>UniRef50_A2FZE7 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1939

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 54  KPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDD 173
           KPE  +     +  V  D+ NH+ +E+E  E+DFV DE++
Sbjct: 854 KPEQKNIKSEEEDFVIDDNENHQDNEIEEEEEDFVIDEEE 893


>UniRef50_UPI000049960C Cluster: hypothetical protein 148.t00012;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 148.t00012 - Entamoeba histolytica HM-1:IMSS
          Length = 168

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +3

Query: 12  ISTEMNRKRNVAFSKPEDPDFLKRLKKQVG---YDDRNHKFDELENSEKDFVSDEDD 173
           I  E   +++  FSKP + DF    ++      +DD N + DE   +E DF   EDD
Sbjct: 89  IVMERETEKSEYFSKPTNDDFSDEFEEDDDDDYFDDSNDEDDEDPENEDDFDDQEDD 145


>UniRef50_Q54X28 Cluster: U3 snoRNP protein; n=1; Dictyostelium
           discoideum AX4|Rep: U3 snoRNP protein - Dictyostelium
           discoideum AX4
          Length = 765

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +3

Query: 12  ISTEMNRKRNVAFSKPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDE 176
           I  E+  K N   +   D + +K+ K+Q+  DD + + DE E+   DF  ++DDE
Sbjct: 122 ILQELESKVNDLTTNSNDLNIIKQKKQQI--DDEDDEDDENEDDFDDFEDEDDDE 174


>UniRef50_Q17D96 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 953

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 22/67 (32%), Positives = 38/67 (56%)
 Frame = +3

Query: 9   IISTEMNRKRNVAFSKPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQV 188
           +IS++   +  V  +K ED + LK  K  V   D++ + +EL+  E D   D++ + P+V
Sbjct: 237 VISSDQELESEVLKTK-EDKE-LKSHK--VISSDQDQELEELKTEEDDDTKDKEVKSPKV 292

Query: 189 VVIKKGD 209
           V + KGD
Sbjct: 293 VSVDKGD 299


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 367,091,540
Number of Sequences: 1657284
Number of extensions: 4567214
Number of successful extensions: 19246
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19052
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)