Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1019
         (637 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    27   0.17 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.1  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   3.7  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +3

Query: 114 NHKFDELENSEKDFVSDEDDE 176
           NHK+++++  E + + D+DD+
Sbjct: 273 NHKYEKIDKEEHESMDDDDDD 293


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 326 DLKKSNKSASSLPKSHNL 379
           ++K S KSASSLP  +N+
Sbjct: 219 NVKLSPKSASSLPPGNNI 236


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 326 DLKKSNKSASSLPKSHNL 379
           ++K S KSASSLP  +N+
Sbjct: 167 NVKLSPKSASSLPPGNNI 184


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 326 DLKKSNKSASSLPKSHNL 379
           ++K S KSASSLP  +N+
Sbjct: 350 NVKLSPKSASSLPPGNNI 367


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 15  STEMNRKRNVAFSKPEDPDFLKRLKKQ 95
           S    RKR V FSK +  +  +R ++Q
Sbjct: 36  SGHKKRKRRVLFSKAQTYELERRFRQQ 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,910
Number of Sequences: 336
Number of extensions: 1383
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)