Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1019
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.32
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 29 0.56
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 29 0.56
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 28 0.98
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 26 4.0
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 5.2
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 5.2
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c... 26 5.2
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 5.2
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 5.2
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 25 6.9
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 25 6.9
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 9.1
>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 29.9 bits (64), Expect = 0.32
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 460 LIMNYITAKANEYGNILI*L-SVNFIKILNHVKNLHLHHDEIFHFTLTSQTYV 615
++++ +T + + NI I NF I +++++HL+H E H +SQ+Y+
Sbjct: 1 MVIDIVTNQFSNLQNIKIFTWKANFESIRINLQHMHLYHYEHIHLFTSSQSYM 53
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 29.1 bits (62), Expect = 0.56
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 78 KRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQ 179
K L + G D + +E E +E +FVSD++DE+
Sbjct: 188 KVLAAREGLIDEGEEEEEREEAELEFVSDDEDEE 221
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 29.1 bits (62), Expect = 0.56
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 12 ISTEMNRKRNVAFSKPEDPDFLKRLKKQVGYDDRNH 119
++ E+ K N AFSK + + + +G D+RNH
Sbjct: 1 MAEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNH 36
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 28.3 bits (60), Expect = 0.98
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 51 SKPEDPD-FLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQVVVIKKGD 209
S PE+ + FL+ L + G DD + + EL++ E + + DE ++V+ KK D
Sbjct: 1345 STPEEREAFLRSLLEHDGDDDHDLTYGELQDDELNELISRTDE--ELVLFKKLD 1396
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 11/54 (20%)
Frame = +3
Query: 63 DPDFLKRLKKQ-------VGYDDRNHKFDELENSEKDFVSDED----DEQPQVV 191
DPD+ + KK +G +D + ++ E+SE+ S+ED DE+PQV+
Sbjct: 349 DPDYEENEKKYDAIKHEILGEEDDDENEEDEEDSEETSESEEDESVNDEKPQVI 402
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Frame = +3
Query: 21 EMNRKRNVAFSKPEDPDFLKRLKKQVGYDDRNHKFDE---------LENSEKDFVSDEDD 173
E N+KRN + +P +R + D+ N +FDE L+ SEK + D+
Sbjct: 12 ETNKKRNPEEADSLEPASSRRRLAEENSDEENEEFDEEGGRFFGSGLKKSEKTVLDFLDE 71
Query: 174 EQPQ 185
++ Q
Sbjct: 72 QEAQ 75
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = +3
Query: 18 TEMNRKRNVAFSKPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDED 170
++ ++K++ + ++ ED DF G+ + + DELE++E + +DE+
Sbjct: 55 SQNDKKKDSSLNESEDEDF-------AGFGESASENDELESAESEAENDEE 98
>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 114 CDHHSLLVFLTF*ENQGLP 58
C+H S LV+++ +N GLP
Sbjct: 106 CNHDSKLVYMSLVQNNGLP 124
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 42 VAFSKPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFV 158
+ F PED D L+ + + H DEL N E FV
Sbjct: 617 ITFLGPEDTDVYYDLRVLLSRSAKAHIPDELRNHEAAFV 655
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/56 (21%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 9 IISTEMNRKRNVAFSKPEDPDFLKRLKKQVGYDDRNHKFD-ELENSEKDFVSDEDD 173
+ +E RKR + ++ + + + K ++N++FD +L+ E+D + E++
Sbjct: 462 VSESEAERKRLFSSAQEKQLQMKETVNKLTSLQEQNNEFDRQLKEQEEDLQNKEEE 517
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 21 EMNRKRNVA--FSKPEDPDFLKRLKKQVGYDDRNHKFDELENSE 146
E +R+ +V+ +SK + ++ L K++GY D+N EL +E
Sbjct: 323 ERHRENDVSELYSKTKRTSKIRELYKEIGY-DKNEFIHELRENE 365
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 54 KPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDE 167
K D LKR KQ+ YD F +L+ + + DE
Sbjct: 140 KDVDKLLLKRDHKQLDYDRHRSSFKKLQEKKDKSLKDE 177
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +3
Query: 15 STEMNRKRNVAFSKPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQVVV 194
S+E++ K ++ +K + + + +Q YD R + +ELE+ DF ++ Q ++
Sbjct: 832 SSEVDNKISIEETKLKFMNVNSYVMEQ--YDARKKEIEELESKMSDFDQSVEELQDEMNS 889
Query: 195 IKK 203
IK+
Sbjct: 890 IKE 892
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,644,440
Number of Sequences: 5004
Number of extensions: 21893
Number of successful extensions: 114
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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