Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1019
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0059 + 12475452-12475785,12475889-12476523                       31   0.77 
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012...    29   4.1  
07_01_1089 + 10004773-10004831,10004924-10005033,10005631-100057...    28   7.1  
12_02_1194 - 26903802-26904127,26904209-26905091,26905131-269054...    27   9.4  
03_01_0335 - 2649566-2649570,2649713-2650787                           27   9.4  
01_01_1127 + 8930593-8932681,8932812-8933401                           27   9.4  

>10_07_0059 + 12475452-12475785,12475889-12476523
          Length = 322

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 18  TEMNRKRNVAFSKPEDPDFLKRLKK-QVGYDDRNHKFDELENSEKDFVSDEDDEQPQVVV 194
           T+ N++R ++    +D DF    ++   G DD +   +  E  E D V D+DD +  VVV
Sbjct: 43  TKKNKRRRIS----DDEDFEAAFEEFDAGDDDSDSDSESEEVDEYDVVVDDDDSEDGVVV 98

Query: 195 I 197
           +
Sbjct: 99  L 99


>07_03_1762 -
           29299328-29299437,29299782-29299871,29300487-29301291,
           29301956-29303278
          Length = 775

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 42  VAFSKPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQ 185
           V+ +KP+ P   +R +K+   DD     DE E  + DF+ ++D E+ +
Sbjct: 194 VSKAKPKKPTSGRRRRKRWATDD-----DEEEEDDADFIVEDDQEEEE 236


>07_01_1089 +
           10004773-10004831,10004924-10005033,10005631-10005749,
           10005833-10005930,10006834-10006921,10006993-10007127,
           10007211-10007313,10007506-10007618,10007821-10007868
          Length = 290

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +3

Query: 63  DPDFLKRLKKQVGYDDRNHKFDELE---NSEKDFVSDEDDEQPQVVVIKKGD 209
           + +  +RLKK V  D  N+ F E +     EKD V+  ++E+ + V   +GD
Sbjct: 161 ESELKERLKKGVYGDIYNYPFKEFDTILEMEKDDVAPTEEEEEEEVEYVEGD 212


>12_02_1194 -
           26903802-26904127,26904209-26905091,26905131-26905427,
           26905638-26905709
          Length = 525

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 78  KRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQVV 191
           K  K Q G  D++     +EN  ++ + DED+ + Q+V
Sbjct: 315 KTKKTQEGMADKSGTSQRVENDSEEVIYDEDEPRVQLV 352


>03_01_0335 - 2649566-2649570,2649713-2650787
          Length = 359

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 78  KRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQVV 191
           K  K Q G  D++     +EN  ++ + DED+ + Q+V
Sbjct: 256 KTKKTQEGMADKSGTSQRVENDSEEVIYDEDEPRVQLV 293


>01_01_1127 + 8930593-8932681,8932812-8933401
          Length = 892

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +3

Query: 87  KKQVGYDDRNHKFDELENSEKDFVS----DEDDEQPQVVVIKKG 206
           +++ GYD+ N KFDE E ++    S    D+DD+  +   + +G
Sbjct: 78  EEEKGYDE-NQKFDEFEGNDAGLFSNAGHDDDDDDREADAVWEG 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,131,549
Number of Sequences: 37544
Number of extensions: 106307
Number of successful extensions: 397
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)