Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1019
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7423| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   2e-04
SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_31997| Best HMM Match : zf-C2H2 (HMM E-Value=1.4013e-45)            28   5.5  
SB_44877| Best HMM Match : GSHPx (HMM E-Value=2.9)                     28   7.3  
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  
SB_544| Best HMM Match : PDZ (HMM E-Value=0.15)                        27   9.7  

>SB_7423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
 Frame = +3

Query: 36  RNVAFSKPEDPDFLKRLKKQVGY---DDRNHKFDELENSEKDFVSDEDDEQPQVVVIK 200
           RN++++K   P F+++ K++VGY   D+ + K  E E S+K+   D + EQP VV+ K
Sbjct: 4   RNISYTKQATPAFIQQFKERVGYKEPDNVDSKRAEAEKSQKEDEVDREGEQPVVVLGK 61


>SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 87  KKQVGY-DDRNHKFDELENSEKDFVSDEDDEQPQVVVIKKGD 209
           KK + Y D+  +  D +E SE+D VS++++E     + ++GD
Sbjct: 376 KKTLAYLDEGTNDSDSVEESEEDAVSEKEEEHGDERLSEEGD 417


>SB_31997| Best HMM Match : zf-C2H2 (HMM E-Value=1.4013e-45)
          Length = 1091

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 78  KRLKKQVGYDDRNHKFDELENSEKDFVSDEDD 173
           KR +++   +D   +F+ELEN +++   DE+D
Sbjct: 763 KRKRRRKHKNDSGDQFEELENDDEEDEEDEED 794


>SB_44877| Best HMM Match : GSHPx (HMM E-Value=2.9)
          Length = 326

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +3

Query: 63  DPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQVVVIK 200
           +P F   +    GY D++H ++E  N  +++  D + +  ++  +K
Sbjct: 168 NPGFSVIIANVSGYSDKDHTYEEFVNLYREYKEDMEKDACEIYDVK 213


>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +3

Query: 60  EDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQVVVIKKG 206
           E  D L +++ + GYD ++H++    + ++         Q QV     G
Sbjct: 106 EQEDMLSQIRMRQGYDQQDHEYQRSTSQDRHIAMTTRKAQVQVSASSSG 154


>SB_544| Best HMM Match : PDZ (HMM E-Value=0.15)
          Length = 742

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +3

Query: 39  NVAFSKPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQVVVIKK 203
           NV   KP  P+  +R   Q+  +   HKF E + SE D +   DD++P+ V   K
Sbjct: 336 NVPSEKP--PEARQRKVSQI--ERFRHKFFEYKKSEIDALDLHDDDKPRGVTRAK 386


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,327,510
Number of Sequences: 59808
Number of extensions: 138675
Number of successful extensions: 605
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)