Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1019
         (637 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         23   6.1  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   6.1  

>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 99  GYDDRNHKFDELENSEKDFVSDEDDEQPQVVV 194
           GYD R  +    E  E +   +E+DE+ ++ V
Sbjct: 362 GYDRRVKQEQRDEEGELEAAEEEEDEEEEISV 393


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 97  TCFFNLLRKSGSSGLEKATFLFLF 26
           T   +L+ KSG +G+ KAT   +F
Sbjct: 60  TSLQDLVYKSGQAGITKATVTLIF 83


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 391,828
Number of Sequences: 2352
Number of extensions: 4912
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62305095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)