Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1019
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72516-1|CAA96687.2|  156|Caenorhabditis elegans Hypothetical pr...    38   0.005
U80452-1|AAB37864.1|  270|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U50066-1|AAA93437.2|  378|Caenorhabditis elegans Resistance to i...    29   2.8  
Z82275-3|CAL44962.1|  478|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z82265-8|CAB05169.2|  478|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF067613-6|AAY86235.1|  126|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z99268-1|CAB16466.1|  715|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z81573-4|CAB04627.1|  715|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z49908-10|CAA90103.1|  715|Caenorhabditis elegans Hypothetical p...    28   6.4  
EU068465-1|ABU49430.1|  715|Caenorhabditis elegans PRO-2 protein.      28   6.4  
Z83107-3|CAB05500.1|  529|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z66495-1|CAA91268.2|  502|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical p...    27   8.5  

>Z72516-1|CAA96687.2|  156|Caenorhabditis elegans Hypothetical
           protein T25G3.1 protein.
          Length = 156

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
 Frame = +3

Query: 33  KRNVAFSKPEDPDFLKRLKKQVGYDDRNHKFDELEN--SEKDFVSDEDD-------EQPQ 185
           K N+ F + E+P F+K +K ++GY +     D+ E+     DF  DE D       ++PQ
Sbjct: 15  KANLHFVEQEEPAFIKAMKAKLGYKEPAKLEDKYEDEAGPADFDDDETDLMRMKEEDRPQ 74

Query: 186 VVVI-KKGDLT 215
           VVV+ +K DLT
Sbjct: 75  VVVLNEKTDLT 85


>U80452-1|AAB37864.1|  270|Caenorhabditis elegans Hypothetical
           protein C16C8.18 protein.
          Length = 270

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 84  LKKQVGYDDRNHKFDELENSEKDFVSDEDD 173
           L  + G ++  HK  + ENS KDF ++ DD
Sbjct: 11  LTNRAGAENCEHKMGKFENSTKDFFTEIDD 40


>U50066-1|AAA93437.2|  378|Caenorhabditis elegans Resistance to
           inhibitors of cholinesteraseprotein 3 protein.
          Length = 378

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/61 (31%), Positives = 35/61 (57%)
 Frame = +3

Query: 21  EMNRKRNVAFSKPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQVVVIK 200
           E+  K   + SK  D   +K+LK++    D + + DE ENS +  +S+ ++E+ +V  +K
Sbjct: 253 EVALKEFQSLSKEYDKAKMKKLKRKDSSSDEDEE-DEEENSSE--LSEIEEEEEEVKPVK 309

Query: 201 K 203
           K
Sbjct: 310 K 310


>Z82275-3|CAL44962.1|  478|Caenorhabditis elegans Hypothetical
           protein F02H6.2 protein.
          Length = 478

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 105 DDRNHKFDELENSEKDFVSDEDDEQ-PQV 188
           D+     DE+E  +K+ VSD DDE+ PQ+
Sbjct: 62  DEERDTDDEVEGFDKEIVSDIDDEEVPQI 90


>Z82265-8|CAB05169.2|  478|Caenorhabditis elegans Hypothetical
           protein F02H6.2 protein.
          Length = 478

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 105 DDRNHKFDELENSEKDFVSDEDDEQ-PQV 188
           D+     DE+E  +K+ VSD DDE+ PQ+
Sbjct: 62  DEERDTDDEVEGFDKEIVSDIDDEEVPQI 90


>U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical protein
            F18C5.3 protein.
          Length = 1490

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 18   TEMNRK-RNVAFSKPEDPDFLKRLKKQVGYDDRNHKFDELE 137
            T+  RK R +A + PED   LKR K +   + R  K DE++
Sbjct: 1429 TDRKRKIRELAVTAPEDAAELKRKKNKKKTEVRKRKIDEIK 1469


>Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 81  RLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQVVVIKKGD 209
           RL K+VG D +     +L +SE+  VS+  + +  VV I +GD
Sbjct: 237 RLFKEVGSDGKTTYTIKLASSEEGIVSEAVEFEGDVVQIVRGD 279


>Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical
           protein F02E9.9a protein.
          Length = 707

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 81  RLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQVVVIKKGD 209
           RL K+VG D +     +L +SE+  VS+  + +  VV I +GD
Sbjct: 199 RLFKEVGSDGKTTYTIKLASSEEGIVSEAVEFEGDVVQIVRGD 241


>Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 81  RLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQVVVIKKGD 209
           RL K+VG D +     +L +SE+  VS+  + +  VV I +GD
Sbjct: 237 RLFKEVGSDGKTTYTIKLASSEEGIVSEAVEFEGDVVQIVRGD 279


>AF067613-6|AAY86235.1|  126|Caenorhabditis elegans Hypothetical
           protein F56D6.11 protein.
          Length = 126

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 15  STEMNRKRNVAFSKPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVS 161
           + EM+   N + SK  D  F K   K +  DD N + DE+  + +DF+S
Sbjct: 20  AAEMDAFHNKS-SKEMDDSFKKNSNKML--DDHNKRADEMVKNHEDFMS 65


>Z99268-1|CAB16466.1|  715|Caenorhabditis elegans Hypothetical
           protein C07E3.2 protein.
          Length = 715

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 48  FSKPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQ 179
           F + ED D L    +  G DD +   D+ +  E++   DEDDE+
Sbjct: 85  FLQQEDADLLNM--EDDGDDDEDDDEDDEDEEEEESDDDEDDEE 126


>Z81573-4|CAB04627.1|  715|Caenorhabditis elegans Hypothetical
           protein C07E3.2 protein.
          Length = 715

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 48  FSKPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQ 179
           F + ED D L    +  G DD +   D+ +  E++   DEDDE+
Sbjct: 85  FLQQEDADLLNM--EDDGDDDEDDDEDDEDEEEEESDDDEDDEE 126


>Z49908-10|CAA90103.1|  715|Caenorhabditis elegans Hypothetical
           protein C07E3.2 protein.
          Length = 715

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 48  FSKPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQ 179
           F + ED D L    +  G DD +   D+ +  E++   DEDDE+
Sbjct: 85  FLQQEDADLLNM--EDDGDDDEDDDEDDEDEEEEESDDDEDDEE 126


>EU068465-1|ABU49430.1|  715|Caenorhabditis elegans PRO-2 protein.
          Length = 715

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 48  FSKPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQ 179
           F + ED D L    +  G DD +   D+ +  E++   DEDDE+
Sbjct: 85  FLQQEDADLLNM--EDDGDDDEDDDEDDEDEEEEESDDDEDDEE 126


>Z83107-3|CAB05500.1|  529|Caenorhabditis elegans Hypothetical
           protein F32A7.4 protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 57  PEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQVVVIKKGD 209
           PE P+ LK+L+ +V    ++ K DE+ + +K+    +  E  Q  +  + D
Sbjct: 104 PESPEKLKKLRDEVKRKLKSGKKDEISDFDKESFGGKVQEAQQYEIRNEVD 154


>Z66495-1|CAA91268.2|  502|Caenorhabditis elegans Hypothetical
           protein C36A4.1 protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
 Frame = +3

Query: 33  KRNVAFSKPEDPDFLKRLKK------QVGYDDRNHKFDELENSEKDFVSDEDDEQPQVVV 194
           +  +  S PE   FL  LK+      ++GYDD N  F+EL     +        Q  +V+
Sbjct: 31  REKIGLSGPEPHWFLGNLKQTAERKEKLGYDDANRWFNELHEQYGETFGIYYGSQMNIVI 90

Query: 195 IKKGDL 212
             + D+
Sbjct: 91  SNEKDI 96


>U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical
           protein C33G8.2 protein.
          Length = 390

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 81  RLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQVVVIKKGD 209
           R KK+   +D+  + +E +  +KD   +EDDE+ +    KK D
Sbjct: 126 RDKKKQEEEDKKKEEEEKDKKKKDKKKEEDDEEEEQKDKKKKD 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,884,288
Number of Sequences: 27780
Number of extensions: 118625
Number of successful extensions: 547
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)