Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1019
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05220.2 68416.m00570 heavy-metal-associated domain-containin...    31   0.48 
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin...    31   0.48 
At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger) fa...    31   0.64 
At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N) f...    28   4.5  
At1g67530.1 68414.m07694 armadillo/beta-catenin repeat family pr...    28   6.0  
At5g02050.1 68418.m00126 mitochondrial glycoprotein family prote...    27   7.9  
At4g34520.1 68417.m04906 fatty acid elongase 1 (FAE1) identical ...    27   7.9  
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil...    27   7.9  

>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
           protein similar to farnesylated protein 1 (GI:23304411)
           {Hordeum vulgare subsp. spontaneum}; contains Pfam
           profile PF00403: Heavy-metal-associated domain
          Length = 478

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 27  NRKRNVAFSKPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDE 176
           ++K++V F+  ED +F      +  YDD +   D+ ++ E D   D+DDE
Sbjct: 70  DQKKSVKFADDEDDEF-----SEDDYDDEDFSEDDYDDDEFDDDEDDDDE 114


>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
           protein similar to farnesylated protein 1 (GI:23304411)
           {Hordeum vulgare subsp. spontaneum}; contains Pfam
           profile PF00403: Heavy-metal-associated domain
          Length = 577

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 27  NRKRNVAFSKPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDE 176
           ++K++V F+  ED +F      +  YDD +   D+ ++ E D   D+DDE
Sbjct: 169 DQKKSVKFADDEDDEF-----SEDDYDDEDFSEDDYDDDEFDDDEDDDDE 213


>At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger)
           family protein low similarity to polycomb-M33
           interacting protein Ring1B [Mus musculus] GI:2239142;
           contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 427

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 17/67 (25%), Positives = 36/67 (53%)
 Frame = +3

Query: 15  STEMNRKRNVAFSKPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQVVV 194
           ++E  R    A  K EDPD +   K + G ++ + K D++E  +++ + +E+D + +   
Sbjct: 20  NSEAERFNPEAVEKEEDPDKMDE-KDESGDEEDDVKRDQVEAEDEEALGEEEDSKERSQS 78

Query: 195 IKKGDLT 215
              G+L+
Sbjct: 79  SSAGELS 85


>At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N)
           family protein similar to SP|Q9RHV9 Lysyl-tRNA
           synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Bacillus
           stearothermophilus}; contains Pfam profile: PF00152 tRNA
           synthetases class II (D, K and N)
          Length = 602

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 45  AFSKPEDP-DFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQVVVIKKGDLTA 218
           AFS+  DP D   RL++QV   +        E+ E +   D+DD++   V + +  LTA
Sbjct: 503 AFSELTDPVDQRTRLEEQVRQHNAKRAEAVRESPEPNAKKDDDDDESYEVTLDEDFLTA 561


>At1g67530.1 68414.m07694 armadillo/beta-catenin repeat family
           protein / U-box domain-containing family protein
           contains Pfam domain, PF00514:
           Armadillo/beta-catenin-like repeats and Pfam, PF04564:
           U-box domain
          Length = 782

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +3

Query: 129 ELENSEKDFVSDEDDEQ 179
           E +N+E+ FVSD+DDE+
Sbjct: 399 ERQNTEESFVSDDDDEE 415


>At5g02050.1 68418.m00126 mitochondrial glycoprotein family protein
           / MAM33 family protein low similarity to SUAPRGA1
           [Emericella nidulans] GI:6562379; contains Pfam profile
           PF02330: Mitochondrial glycoprotein
          Length = 267

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = +3

Query: 54  KPEDPDFLKRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQ------PQVVVIKKGD 209
           K ED      +     YDD + + +   N+E+D   DED E       P VV ++KGD
Sbjct: 121 KFEDETIQVEVDSVASYDDEDEEEEAEPNNEED---DEDQESSGKVRVPMVVSVQKGD 175


>At4g34520.1 68417.m04906 fatty acid elongase 1 (FAE1) identical to
           fatty acid elongase 1 [GI:881615]
          Length = 506

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +3

Query: 36  RNVAFSKPEDPDFLKRLKKQVGYDDRNHKFDELEN--SEKDFVSDEDDEQPQVV 191
           RNVA   P   DFL++++++ G  D  +  + L +    K F +  ++ +  ++
Sbjct: 113 RNVACDDPSSLDFLRKIQERSGLGDETYSPEGLIHVPPRKTFAASREETEKVII 166


>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
           protein / CHD family protein similar to SP|O14647
           Chromodomain-helicase-DNA-binding protein 2 (CHD-2)
           {Homo sapiens}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain, PF00385: 'chromo' (CHRromatin
           Organization MOdifier)
          Length = 1722

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 78  KRLKKQVGYDDRNHKFDELENSEKDFVSDEDDEQPQ 185
           + + K + Y D NH  D   +++ D+  +ED++ P+
Sbjct: 220 RAIHKNIHYSDSNH--DHNGDADMDYEEEEDEDDPE 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,064,182
Number of Sequences: 28952
Number of extensions: 100959
Number of successful extensions: 416
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)