Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1018
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    34   0.017
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    27   2.6  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   2.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.4  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    27   3.4  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    26   5.9  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   5.9  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   7.8  

>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 318 CACCSNKPVLPHTMGCSHIFC 256
           CA CSN    P  +GCSH+FC
Sbjct: 360 CAICSNVAYKPVRLGCSHVFC 380


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 334 DFEYCVCLLLKQTSIASYYGMQSYFLFYCLVANKTMDQDY 215
           D  Y   +L+K+ S ++  G  S  +F CL   +T   DY
Sbjct: 123 DDSYAGAVLIKKASTSNSSGWDSIHVFECLPTTETNVYDY 162


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 312 CCSNKPVLPHTMGCSHIFCFT 250
           C   KPV      C H++CF+
Sbjct: 217 CLEEKPVAARMSRCGHVYCFS 237


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/46 (21%), Positives = 22/46 (47%)
 Frame = -3

Query: 343  SKYDFEYCVCLLLKQTSIASYYGMQSYFLFYCLVANKTMDQDYACP 206
            SK+D++  + L LK + +   Y      + +    +KT+ + +  P
Sbjct: 1017 SKFDYQKLISLTLKDSDVCVIYNFVDDLVIFLKKCDKTLIEGFVLP 1062


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 352 TWSSKYDFEYCVCLLLKQTSIASY 281
           TWS+  D +  VCL L    +AS+
Sbjct: 238 TWSTGRDIQIAVCLTLSDEDLASF 261


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = -1

Query: 666 QKVQNFIQKC*KNSVIQ*STKFSKVYTKWKTSFTNRLHFRPRANRC*SNKRRLTDFSWTR 487
           Q+V N +    +N+V+Q  T   K       +F + L  +PR N   S+K      S TR
Sbjct: 66  QRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLN---SSKIHSVILSPTR 122

Query: 486 ELLWHNLIE----LFGTGISLFNIIG 421
           EL      E     +GTGI +   IG
Sbjct: 123 ELALQIFEEARKLTYGTGIRVSYAIG 148


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -1

Query: 324  TVCACCSNKPVLPH-TMGCSHIFCF 253
            +VC  C   P+LP   M C  + CF
Sbjct: 1917 SVCCMCHKTPILPAICMLCGSVICF 1941


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -1

Query: 504 DFSWTRELLWHNLIELFG-TGISLFN---IIGLKQRLSKFLKYVWWNKPVHTFSQP 349
           D+S     LWH L+E FG  G+++     ++GL      F+     N  +H    P
Sbjct: 92  DYSIVSASLWHMLVEWFGLEGLAIERKVLLVGLAAEQKPFVDIYPINFTLHVLFDP 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,647
Number of Sequences: 5004
Number of extensions: 59168
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)