Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1018
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0471 - 14455543-14455650,14455925-14456002,14456121-144562...    33   0.16 
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836...    30   1.5  
02_03_0412 - 18749430-18749587,18749696-18749857,18750062-187501...    30   1.5  
01_06_1819 + 40110697-40110721,40110818-40110828,40111228-401115...    30   1.5  
01_01_0475 + 3500385-3500880,3501078-3501154,3501851-3502019,350...    29   2.6  
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283...    28   6.1  

>05_03_0471 -
           14455543-14455650,14455925-14456002,14456121-14456285,
           14457151-14457261,14457863-14458024,14458462-14458538,
           14459526-14460177
          Length = 450

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = -1

Query: 471 NLIELFGTGISL-FNIIGLKQRLSKFLKYV--WWNKPVHTFSQPGAPNMTLS-TVCACCS 304
           +L     TG+ L F +  + +++  FL  V     K VH  S   A  +  +  +CA C 
Sbjct: 368 SLFSSLTTGLYLTFKLTSVVEKVQSFLAAVKALSRKDVHYGSYATAEQVIAAGDMCAICQ 427

Query: 303 NKPVLPHTMGCSHIFC 256
            K  +P  + C HIFC
Sbjct: 428 EKMHVPVLLRCKHIFC 443


>08_02_1329 -
           26182762-26183007,26183149-26183249,26183533-26183602,
           26183692-26183895,26186435-26186941,26188672-26188677
          Length = 377

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -1

Query: 393 KYVWWNKPVHTFSQPGAPNMTLSTVCACCSNKPVLPHTMGCSHIFC 256
           K V      H    P  P  T    C  C NK   P T  C HIFC
Sbjct: 298 KNVAQTSTTHAKVAPKEPTFT----CPVCLNKLDKPSTTNCGHIFC 339


>02_03_0412 -
           18749430-18749587,18749696-18749857,18750062-18750194,
           18751640-18751744,18751818-18751935,18752232-18752320,
           18752407-18753660,18753785-18753831,18754285-18754339,
           18754783-18754884
          Length = 740

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 318 CACCSNKPVLPHTMGCSHIFCF 253
           C  C   P+ P    C HI+CF
Sbjct: 232 CPICLESPLCPQITSCGHIYCF 253


>01_06_1819 +
           40110697-40110721,40110818-40110828,40111228-40111572,
           40111707-40111782,40113605-40113771,40113818-40114036
          Length = 280

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 402 KFLKYVWWNKPVHTFSQPGAPNMTLSTVCACCSNKPVLPHTMGCSHIFC 256
           +FL+Y +   P    + P  P       C  C N+ V P +  C HIFC
Sbjct: 201 EFLQYTYQALPEPEKAVPKEPTFN----CPVCMNELVEPSSTICGHIFC 245


>01_01_0475 +
           3500385-3500880,3501078-3501154,3501851-3502019,
           3502385-3502473,3502601-3502765,3502841-3502918,
           3503087-3503190,3503317-3503422
          Length = 427

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = -1

Query: 471 NLIELFGTGISL-FNIIGLKQRLSKFLKYV--WWNKPVHTFSQPGAPNMTLS-TVCACCS 304
           +L     TG+ L F +  + +++  FL  +    +K  H  S   +  ++ +  +CA C 
Sbjct: 311 SLFSSLTTGLYLTFKLTSVVEKVQSFLTALRALSHKDFHYGSYATSEQVSATGDMCAICQ 370

Query: 303 NKPVLPHTMGCSHIFC 256
            K   P  + C HIFC
Sbjct: 371 EKMHTPILLRCKHIFC 386


>01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,
            2833799-2833868,2834021-2834108,2834325-2834580,
            2834758-2834883,2835217-2835425
          Length = 1410

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 525  SNKRRLTDFSWTRELLWHNLIELFGTGIS 439
            +N    TD S TR ++  +L+ LFG GIS
Sbjct: 983  TNYTDATDASMTRGIIQQSLVSLFGLGIS 1011


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,130,736
Number of Sequences: 37544
Number of extensions: 317327
Number of successful extensions: 613
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)