Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1018
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5526| Best HMM Match : zf-C3HC4 (HMM E-Value=2)                     38   0.008
SB_4876| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.50 
SB_29985| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_30967| Best HMM Match : Remorin_N (HMM E-Value=4.9)                 29   4.7  
SB_15335| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_40155| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_18864| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_5526| Best HMM Match : zf-C3HC4 (HMM E-Value=2)
          Length = 106

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 351 PGAPNMTLST-VCACCSNKPVLPHTMGCSHIFCF 253
           P +PN+ ++   C+ CS  P  PH   C H+FC+
Sbjct: 69  PSSPNVKVAFHQCSICSEPPTAPHQGACEHVFCY 102


>SB_4876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 635 EKIQLFSEVLNFLRFIQSGKHPLLIDFI 552
           EKI  F+ ++NFL F+Q G++P ++  I
Sbjct: 47  EKILQFASMINFLVFLQKGRYPFIMTMI 74


>SB_29985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 79  LFYEKSQHPFINDTNLGLSLIKFNHIIRKL*VWQHFFLR 195
           +F    + PF+  T+L L  +KFN I+ K  V++ FF+R
Sbjct: 77  MFCSDLEGPFVATTDL-LKSVKFNEILPKEVVFEDFFIR 114


>SB_30967| Best HMM Match : Remorin_N (HMM E-Value=4.9)
          Length = 263

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 267 DCIP*YEAILVCLSNKHTQYSKSYLEL 347
           +CI  Y +   C+ NK+ QYS SY +L
Sbjct: 193 ECILSYTSSWNCIENKYAQYSGSYYKL 219


>SB_15335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 113 TTRI*VSH**NLITSLGSCKFGNIFSYVVAFRTCIILIHSFVCHQTVKQKI 265
           T R+ +SH    IT+   C + N   Y +  R  +IL+  ++C+   +Q I
Sbjct: 10  TWRLILSHLIASITNYFCCLYRNAKRYALKLRFRVILVLFYMCYTVYRQNI 60


>SB_40155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 79  LFYEKSQHPFINDTNLGLSLIKFNHIIRKL*VWQHFFLR 195
           +F    + PF+  T+L  S +KFN I+ K  V++ FF+R
Sbjct: 421 MFCSDLEGPFVATTDLPKS-VKFNTILPKEVVFEDFFIR 458


>SB_18864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 79  LFYEKSQHPFINDTNLGLSLIKFNHIIRKL*VWQHFFL 192
           +F    + PF+  T+L L  +KFN I+ K  V++ FF+
Sbjct: 77  MFCSDLEGPFVATTDL-LKSVKFNEILPKEVVFEDFFI 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,382,204
Number of Sequences: 59808
Number of extensions: 395472
Number of successful extensions: 816
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)