Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1018
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical...    33   0.25 
Z93388-15|CAB07667.1|  356|Caenorhabditis elegans Hypothetical p...    31   0.59 
Z93374-10|CAB07561.1|  356|Caenorhabditis elegans Hypothetical p...    31   0.59 
U40421-3|AAA81439.2|  347|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z93388-2|CAB07659.1|  369|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z19156-2|CAE17940.2|  275|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U41007-21|AAK84502.1|  465|Caenorhabditis elegans Hypothetical p...    29   4.1  
U41007-20|AAA82275.1|  455|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z93374-1|CAB07554.1|  346|Caenorhabditis elegans Hypothetical pr...    28   7.2  
L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical
           protein Y105E8A.14 protein.
          Length = 224

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 345 APNMTLSTVCACCSNKPVLPHTM-GCSHIFCF 253
           A N T+   CA C ++ +LP T+  C H FCF
Sbjct: 15  AINSTIDKECAVCYSEMILPTTIPSCGHKFCF 46


>Z93388-15|CAB07667.1|  356|Caenorhabditis elegans Hypothetical
           protein C06C6.1 protein.
          Length = 356

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 349 WSSKYDFEYCVCLLLKQTSIASYYGMQSYFLFYCLVAN 236
           W S      CVC+L +  S+  Y+ ++SYF+   L+ +
Sbjct: 192 WDSFIGTFLCVCILFRSESLMLYFALKSYFVTKSLMTS 229


>Z93374-10|CAB07561.1|  356|Caenorhabditis elegans Hypothetical
           protein C06C6.1 protein.
          Length = 356

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 349 WSSKYDFEYCVCLLLKQTSIASYYGMQSYFLFYCLVAN 236
           W S      CVC+L +  S+  Y+ ++SYF+   L+ +
Sbjct: 192 WDSFIGTFLCVCILFRSESLMLYFALKSYFVTKSLMTS 229


>U40421-3|AAA81439.2|  347|Caenorhabditis elegans Hypothetical
           protein C02B8.6 protein.
          Length = 347

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 330 LSTVCACCSNKPVLPHTMGCSHIFCF 253
           ++ +C  C N P  P  + C+H FC+
Sbjct: 1   MTDICTICHNTPNRPVRLDCNHEFCY 26


>Z93388-2|CAB07659.1|  369|Caenorhabditis elegans Hypothetical
           protein T10C6.2 protein.
          Length = 369

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 349 WSSKYDFEYCVCLLLKQTSIASYYGMQSYFLFYCLVAN 236
           W S      CVC+L    S+  Y+ ++SYF+   L+ +
Sbjct: 214 WDSFIGTFLCVCILFGSESLMLYFALKSYFVTKSLMTS 251


>Z19156-2|CAE17940.2|  275|Caenorhabditis elegans Hypothetical
           protein T02C1.2 protein.
          Length = 275

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 321 VCACCSNKPVLPHTMGCSHIFC 256
           +C  C +  V PHT+ C H FC
Sbjct: 99  LCTICYDIIVEPHTLRCQHSFC 120


>U41007-21|AAK84502.1|  465|Caenorhabditis elegans Hypothetical
           protein C33H5.18b protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 513 RLTDFSWTRELLWHNLI--ELFGTGISLFNIIGLKQRLSKFLKYV 385
           RL DF W R L W+ L+    F  G SL +  G+  +   FL ++
Sbjct: 144 RLYDFPWFRALSWYFLLTSNYFFFGESLIDYWGIVLKKDNFLHFL 188


>U41007-20|AAA82275.1|  455|Caenorhabditis elegans Hypothetical
           protein C33H5.18a protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 513 RLTDFSWTRELLWHNLI--ELFGTGISLFNIIGLKQRLSKFLKYV 385
           RL DF W R L W+ L+    F  G SL +  G+  +   FL ++
Sbjct: 134 RLYDFPWFRALSWYFLLTSNYFFFGESLIDYWGIVLKKDNFLHFL 178


>Z93374-1|CAB07554.1|  346|Caenorhabditis elegans Hypothetical
           protein C06C6.2 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 349 WSSKYDFEYCVCLLLKQTSIASYYGMQSYFLFYCLVAN 236
           W S      C C+L    S+  Y+ ++SY +   L+ +
Sbjct: 193 WDSFIGMSLCTCILFGSESLMLYFALKSYLVTKSLMTS 230


>L15314-6|AAF99987.1|  406|Caenorhabditis elegans Hypothetical
           protein K06H7.2 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 609 TKFSKVYTKWKTSFTNRLHFRPRANRC*SNKRRLTD 502
           T   K+Y   KT+ +N   F  +A +C  N   +TD
Sbjct: 248 TNCEKLYLYHKTNISNEQFFELKAKKCSFNSSNITD 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,019,006
Number of Sequences: 27780
Number of extensions: 322984
Number of successful extensions: 751
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)