Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1018
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica...    32   0.41 
At4g29200.1 68417.m04177 hypothetical protein                          31   0.54 
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing...    31   0.72 
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    31   0.95 
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica...    29   3.8  
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica...    28   5.1  
At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger) fa...    27   8.9  

>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to SP|P31244 DNA
           repair protein RAD16 {Saccharomyces cerevisiae};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 638

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 327 STVCACCSNKPVLPHTMGCSHIFCF 253
           ST C+ CS+ P  P    C H+FC+
Sbjct: 392 STTCSVCSDPPKDPVVTLCGHVFCY 416


>At4g29200.1 68417.m04177 hypothetical protein
          Length = 457

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
 Frame = -3

Query: 424 WFKAKALKVFEICMVEQTCAYI*STWSSKYDFEYCVCLLL---KQTSIASYYGMQSYFLF 254
           W  +K LK F +  +  TC  +      K  FE  V +       +SIA      S  +F
Sbjct: 265 WPHSKVLKTFSLIFLNCTCLCV------KCGFELWVFIAQWSPSSSSIAFKLITMSIIMF 318

Query: 253 YCLVANKTMDQDYACPKCY 197
           +CL+    +D+ + C  C+
Sbjct: 319 HCLIVYAAIDRRFVCLLCW 337


>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
           protein / zinc finger (C3HC4-type RING finger)
           protein-related weak similarity to tripartite motif
           protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
           profile PF03105: SPX domain, weak hit to PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 335

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 378 NKPVHTFSQPGAPNMTLSTVCACCSNKPVLPHTMGCSHIFC 256
           ++PV     P +  +     CA C      P+ + C HIFC
Sbjct: 211 DQPVLKLMLPNSIELEYDLTCAICLETVFNPYALKCGHIFC 251


>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 318 CACCSNKPVLPHTMGCSHIFCF 253
           C  C   P+ P    C HIFCF
Sbjct: 245 CPICLEYPLCPQITSCGHIFCF 266


>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 981

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 327 STVCACCSNKPVLPHTMGCSHIFCF 253
           S +C  C + P  P    C HIFC+
Sbjct: 676 SPICCVCHDPPEDPVVTLCGHIFCY 700


>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 1047

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 327 STVCACCSNKPVLPHTMGCSHIFCF 253
           S +C  C+  P  P    C HIFC+
Sbjct: 748 SAICYECNEPPEKPVVTLCGHIFCY 772


>At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 426

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
 Frame = -1

Query: 495 WTRELLWHNLIELFG---TGISL-FNIIGLKQRLSKFLKYV--WWNKPVHTFSQPGAPNM 334
           W R  L  +   LF    TG+ L F +  + +++  F   +     K VH  S      +
Sbjct: 299 WYRFFLNKDYGSLFSSLMTGLYLTFKLTSVVEKVQSFFTALKALSRKEVHYGSYATTEQV 358

Query: 333 TLS-TVCACCSNKPVLPHTMGCSHIFC 256
             +  +CA C  K   P  + C H+FC
Sbjct: 359 NAAGDLCAICQEKMHTPILLRCKHMFC 385


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,724,119
Number of Sequences: 28952
Number of extensions: 284217
Number of successful extensions: 674
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)