Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1017
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    26   4.9  
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce...    25   6.4  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   6.4  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    25   8.5  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    25   8.5  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   8.5  

>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 460 PPFASWRNSRRGPHRSPSQQLRSLN 534
           PP AS RN R     +PS+Q  S+N
Sbjct: 353 PPGASGRNRRERTSSTPSEQSTSVN 377


>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 398 FYNVVTGKTLALPNLIALQHIPLSPAGVIAEEARTDRLPN 517
           F   V+GK   L NL  L+  PL+  G   EE      P+
Sbjct: 98  FGKTVSGKVRNLGNLTPLEQTPLASVGKNLEEKEAAAKPS 137


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = -2

Query: 314 PTLQTETHYCFTAEISRVVVPPAQTHKRSYHQYKIYISYGRK 189
           P +   T  C   ++  V       HKR+YHQ +  +  G +
Sbjct: 132 PNMPNATFRCDKCDMMFVKQSGLTNHKRTYHQVETVVIIGHR 173


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 127 NSMNLSKEYY*LSFIPFLSSGL 192
           NS+    E Y  SF+PFLSS L
Sbjct: 628 NSLEEQFEVYVPSFVPFLSSAL 649


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 163 IVNNILSTSSYYFHSKFHQKNRI 95
           + +N + +  YYF+ KF   NRI
Sbjct: 346 LADNAVRSGMYYFYLKFESLNRI 368


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -2

Query: 488 RLLRQLAKGGCAARRLSWVTPGFSQS--RRCKTTASEL*YDSL*GELGTGPPLEYSYNGC 315
           RLLR L +    +R + W+  G SQ          SEL   S  G     PPL  S++ C
Sbjct: 601 RLLRTLKRLASDSRNIVWILSGRSQKFMEEWMGDISELGLSSEHGS-AIRPPLAGSWSSC 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,803
Number of Sequences: 5004
Number of extensions: 57662
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)